Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000277-TA|BGIBMGA000277-PA|IPR000618|Insect cuticle
protein
         (162 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)                      32   0.20 
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.61 
SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15)          28   4.3  
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)                      27   5.6  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5)                   27   7.5  
SB_34999| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
          Length = 330

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 103 HKSQHESRD-GDSVHG---SYSLVQPDGSVRKVDYTADEHHGFNAVVHNSAPSVHPI-AA 157
           HKS H SR  G S  G   SYS     GS R+    +   H  ++  H S PS H    +
Sbjct: 165 HKSHHSSRQHGHSKSGRTSSYSSDSSPGSGREKSSHSRSVHKSHSSKH-SHPSSHSTNRS 223

Query: 158 HHHHY 162
           HHHH+
Sbjct: 224 HHHHH 228


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 90   DFAYSVADPHTGDHKSQHESRDGDSV--HGSYSLVQPDGSVRKVDYTAD 136
            D  +   +   GD   +H+  DGDSV  H  Y+    D  VR  DY  D
Sbjct: 1863 DVRHDEYNDEDGDSDVRHDDYDGDSVVRHDDYNDDNGDSDVRHDDYDGD 1911


>SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15)
          Length = 846

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 84  YAHPKYDFAYSVADPHTGDHKSQHESRDGD-SVHGSYS 120
           Y    YD  Y+VA   +G +++ H +R  D SV G YS
Sbjct: 681 YTAQVYDAVYAVAHATSGLYRNGHVTRGNDWSVVGEYS 718


>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
          Length = 244

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 101 GDHKSQH---ESRDGDSVHGSYSLVQPDGSVRKVDYTADEHHGFNAVVHNSAPSVHPIAA 157
           G H+ QH   E   G       S  +  G+ R+   T +E HG +   H +    H    
Sbjct: 48  GTHRQQHVTYEEEHGTHRQQHVSYEEEHGTHRQQHVTYEEEHGTHRQQHVTYEEEHGTHR 107

Query: 158 HHH 160
            HH
Sbjct: 108 QHH 110


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)

Query: 90   DFAYSVADPHTGDHK 104
            DFAY   DPHT  HK
Sbjct: 1425 DFAYVARDPHTSKHK 1439


>SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5)
          Length = 473

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 90  DFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEHHGFNAVVHNSA 149
           D+A  V D   GD+    +S  GD V  S S     G   +V Y A    G  A + +S 
Sbjct: 183 DYA-RVCDSFQGDYARVSDSFQGDYVRVSDSFQSFQGDYARVRYAAAGFFGRQA-IDDSR 240

Query: 150 PSVHPIAAH 158
           P++     H
Sbjct: 241 PTLEESRLH 249


>SB_34999| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 91  FAYSVADPHTGDHKSQHESRDG--DSVHGSYSLVQPDGSVR 129
           F +     H GDH+S HE + G  D   G ++  +P+  +R
Sbjct: 97  FFFFAVSQH-GDHQSHHEEKRGLQDLAQGLHACARPEKLIR 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.131    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,373,559
Number of Sequences: 59808
Number of extensions: 147215
Number of successful extensions: 456
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 448
Number of HSP's gapped (non-prelim): 13
length of query: 162
length of database: 16,821,457
effective HSP length: 77
effective length of query: 85
effective length of database: 12,216,241
effective search space: 1038380485
effective search space used: 1038380485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)