Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000277-TA|BGIBMGA000277-PA|IPR000618|Insect cuticle
protein
         (162 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    26   0.21 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   4.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   4.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   4.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   8.0  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.8 bits (54), Expect = 0.21
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 117 GSYSLVQPDGSVRKVDYTADEHHGFNAVVHNSAPSVHPI 155
           GS S   PDG    + Y ADE +GF  V  +  P+  PI
Sbjct: 73  GSDSYTAPDGQQVSITYVADE-NGFQ-VQGSHIPTAPPI 109


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 150 PSVHPIAAHHHH 161
           P V   AAHHHH
Sbjct: 90  PYVSAAAAHHHH 101


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 146 HNSAPSVHPIAAHHHH 161
           H   P++ P   HHHH
Sbjct: 341 HTMGPTMGPPHHHHHH 356


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 133 YTADEHHGFNAVVHNSAPSVHPIAAHHHHY 162
           Y ADE      V HNS  S H + ++   Y
Sbjct: 204 YIADEKGEGLIVYHNSDDSFHRLTSNTFDY 233


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 133 YTADEHHGFNAVVHNSAPSVHPIAAHHHHY 162
           Y ADE      V HNS  S H + ++   Y
Sbjct: 204 YIADEKGEGLIVYHNSDDSFHRLTSNTFDY 233


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 133 YTADEHHGFNAVVHNSAPSVHPIAAHHHHY 162
           Y ADE      V HNS  S H + ++   Y
Sbjct: 204 YIADEKGEGLIVYHNSDDSFHRLTSNTFDY 233


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 121 LVQPDGSVRKVDYTADEHHGFNAVVHNSAPSVHPIAAHHHHY 162
           +VQ    V  + Y AD+      V  NS  S H + ++   Y
Sbjct: 193 VVQAMDPVNTIVYMADDKGDALIVYQNSDESFHRLTSNTFDY 234


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,939
Number of Sequences: 429
Number of extensions: 976
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 162
length of database: 140,377
effective HSP length: 53
effective length of query: 109
effective length of database: 117,640
effective search space: 12822760
effective search space used: 12822760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)