Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000277-TA|BGIBMGA000277-PA|IPR000618|Insect cuticle
protein
         (162 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79580.3 68414.m09279 no apical meristem (NAM) family protein...    31   0.28 
At1g79580.2 68414.m09278 no apical meristem (NAM) family protein...    31   0.28 
At1g79580.1 68414.m09277 no apical meristem (NAM) family protein...    31   0.28 
At2g07710.1 68415.m00998 hypothetical protein                          30   0.87 
At1g14690.1 68414.m01756 microtubule associated protein (MAP65/A...    29   1.5  
At5g06839.1 68418.m00773 bZIP family transcription factor contai...    28   2.6  
At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family...    28   2.6  
At1g69990.1 68414.m08055 leucine-rich repeat transmembrane prote...    28   3.5  

>At1g79580.3 68414.m09279 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 136 DEHHGFNAVVHNSAPSV-HPIAAHHHHY 162
           D HH  ++  +N +P + HP+  HHHH+
Sbjct: 195 DHHHHIDSNSNNHSPLILHPLDHHHHHH 222


>At1g79580.2 68414.m09278 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 136 DEHHGFNAVVHNSAPSV-HPIAAHHHHY 162
           D HH  ++  +N +P + HP+  HHHH+
Sbjct: 195 DHHHHIDSNSNNHSPLILHPLDHHHHHH 222


>At1g79580.1 68414.m09277 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 136 DEHHGFNAVVHNSAPSV-HPIAAHHHHY 162
           D HH  ++  +N +P + HP+  HHHH+
Sbjct: 195 DHHHHIDSNSNNHSPLILHPLDHHHHHH 222


>At2g07710.1 68415.m00998 hypothetical protein
          Length = 150

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 146 HNSAPSVHPIAAHHHH 161
           H+ +PS+ P+A HHHH
Sbjct: 55  HHFSPSLDPVAEHHHH 70


>At1g14690.1 68414.m01756 microtubule associated protein
           (MAP65/ASE1) family protein low similarity to SP|P32380
           NUF1 protein (Spindle poly body spacer protein SPC110)
           {Saccharomyces cerevisiae}, smooth muscle myosin heavy
           chain [Homo sapiens] GI:4417214; contains Pfam profile
           PF03999: Microtubule associated protein (MAP65/ASE1
           family)
          Length = 707

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 90  DFAYSVADPHTGDHKSQHESR---DGDSVHGSYSLVQPDGSVRKVDYTADEHHGFNAVV 145
           DF  +V++ H   H++ HE       D++ G + ++    + R V +   + H  NA++
Sbjct: 191 DFGQTVSEVHPSLHRTDHEQSTNISDDTLDGLHHMIHKLKTERSVRFQKVDKHACNAIL 249


>At5g06839.1 68418.m00773 bZIP family transcription factor contains
           Pfam profile: PF00170 bZIP transcription factor
          Length = 417

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 101 GDHKSQHESRDGDSVHGSY-SLVQPDG-SVRKVDYTADEHHGFNAVVHNSAPSVHPIAAH 158
           G H++ H+     S   S+ + +  DG  + ++D +   +   +   H+  PS  P   H
Sbjct: 3   GHHQNHHQHLSSSSATSSHGNFMNKDGYDIGEIDPSLFLY--LDGQGHHDPPSTAPSPLH 60

Query: 159 HHH 161
           HHH
Sbjct: 61  HHH 63


>At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family
           protein
          Length = 532

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 87  PKYDF-AYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEHHGFNAVV 145
           P+Y   AY+ + P    ++S       ++VHGSY           V Y        + V 
Sbjct: 458 PQYGVPAYTTSPPTIYSNRSPPYQYSPEAVHGSYQ-------TSPVSYPTAYGTYCSPVA 510

Query: 146 HNSAPSVHPIAAHHHH 161
               P  HP   HHHH
Sbjct: 511 APPPPVYHPHPHHHHH 526


>At1g69990.1 68414.m08055 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor-like protein kinase
           GI:8777368 from [Arabidopsis thaliana]
          Length = 591

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 17/66 (25%), Positives = 27/66 (40%)

Query: 90  DFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEHHGFNAVVHNSA 149
           DF   V D   G   S  +S+D    +G +  V P+ S   V   + + +GF  V+    
Sbjct: 427 DFDARVIDYGLGKLVSSQDSKDSSFSNGKFGYVAPEYSSTMVASLSGDVYGFGIVLLEIV 486

Query: 150 PSVHPI 155
               P+
Sbjct: 487 TGQKPV 492


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.131    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,698
Number of Sequences: 28952
Number of extensions: 99998
Number of successful extensions: 235
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 11
length of query: 162
length of database: 12,070,560
effective HSP length: 76
effective length of query: 86
effective length of database: 9,870,208
effective search space: 848837888
effective search space used: 848837888
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)