GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000277-TA|BGIBMGA000277-PA|IPR000618|Insect cuticle
protein
         (162 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81511-2|AAC23705.1|  268|Homo sapiens HOXA-9B protein.                30   3.3  
BC110510-1|AAI10511.2|  805|Homo sapiens KIAA1546 protein protein.     29   5.7  
BC110509-1|AAI10510.1|  805|Homo sapiens KIAA1546 protein protein.     29   5.7  
AB046766-1|BAB13372.1|  684|Homo sapiens KIAA1546 protein protein.     29   7.6  

>U81511-2|AAC23705.1|  268|Homo sapiens HOXA-9B protein.
          Length = 268

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 145 VHNSAPSVHPIAAHHHHY 162
           VH  AP+++P+  HHHH+
Sbjct: 68  VHARAPTLYPLVYHHHHH 85


>BC110510-1|AAI10511.2|  805|Homo sapiens KIAA1546 protein protein.
          Length = 805

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 117 GSYSLVQPDGSVRKVDYTADEHHGFNAVVHN--SAPSVHPIAAHHHH 161
           G+ S + P+ S   +DY   EHH  + V+HN  +AP +   + H  H
Sbjct: 538 GATSRLPPNLSNPNMDYKNGEHHSPSHVIHNYSAAPGMFNSSLHALH 584


>BC110509-1|AAI10510.1|  805|Homo sapiens KIAA1546 protein protein.
          Length = 805

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 117 GSYSLVQPDGSVRKVDYTADEHHGFNAVVHN--SAPSVHPIAAHHHH 161
           G+ S + P+ S   +DY   EHH  + V+HN  +AP +   + H  H
Sbjct: 538 GATSRLPPNLSNPNMDYKNGEHHSPSHVIHNYSAAPGMFNSSLHALH 584


>AB046766-1|BAB13372.1|  684|Homo sapiens KIAA1546 protein protein.
          Length = 684

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 117 GSYSLVQPDGSVRKVDYTADEHHGFNAVVHN--SAPSVHPIAAHHHH 161
           G+ S + P+ S   +DY   EHH  + ++HN  +AP +   + H  H
Sbjct: 417 GATSRLPPNLSNPNMDYKNGEHHSPSHIIHNYSAAPGMFNSSLHALH 463


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.316    0.131    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,933,833
Number of Sequences: 224733
Number of extensions: 535741
Number of successful extensions: 4351
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4350
Number of HSP's gapped (non-prelim): 4
length of query: 162
length of database: 73,234,838
effective HSP length: 84
effective length of query: 78
effective length of database: 54,357,266
effective search space: 4239866748
effective search space used: 4239866748
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)