GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000277-TA|BGIBMGA000277-PA|IPR000618|Insect cuticle
protein
         (162 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    34   0.056
Z11505-7|CAA77581.1|  918|Caenorhabditis elegans Hypothetical pr...    28   2.8  

>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 33.9 bits (74), Expect = 0.056
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 80  GHDEYAHPKYDFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEHH 139
           GH   AH  +   + V   H G H + + +  G   HG++    P       ++  D HH
Sbjct: 596 GHHAPAHHGHHGEHGV---HHGHHGAGYGAHHGH--HGAHHHHAPHHEHH--EHHGDHHH 648

Query: 140 GFNAVVHNSAPSVHPIAAHHHH 161
           G + V H    + H +A H HH
Sbjct: 649 GSHGVHHGHHGTHHSLAHHGHH 670



 Score = 28.7 bits (61), Expect = 2.1
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 82  DEYAHPKYDFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEHHGF 141
           + + H  +   + V   H G+H   H S      HG++     +       +   E HG 
Sbjct: 388 EHHEHAAHHDEHGVHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHGH 447

Query: 142 NAVVHNSAPSVHPIAAHHHH 161
               H+S P+ H     HHH
Sbjct: 448 G---HHS-PAHHGHHGEHHH 463



 Score = 27.9 bits (59), Expect = 3.7
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 81  HDEYAHPKYDFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEH-- 138
           H   AH  +   +  A  H G H  +H +  G   HGS+      G   +  +    H  
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHH-GEHGTHHGH--HGSHHSPAHHGHHGEHHHAPAHHGH 518

Query: 139 HGFNAVVHNSAPSVHPIAAHHHHY 162
           HG +   H      H   AHH H+
Sbjct: 519 HGEHGTHHGHHGEHHHAPAHHGHH 542



 Score = 27.5 bits (58), Expect = 4.9
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 7/84 (8%)

Query: 80  GHDEYAHPKYDFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEHH 139
           GH   AH  +   +  A  H G H   H +      HG +             + +  HH
Sbjct: 448 GHHSPAHHGHHGEHHHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHG----SHHSPAHH 503

Query: 140 GFNAVVHNSAPSVHPIAAHH--HH 161
           G +   H+ AP+ H     H  HH
Sbjct: 504 GHHG-EHHHAPAHHGHHGEHGTHH 526



 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 138 HHGFNAV-VHNSAPSVHPIAAHHHH 161
           HHG +    H + P  H +  HHHH
Sbjct: 77  HHGHHTHHAHGAHPGHHEVHHHHHH 101



 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/63 (25%), Positives = 19/63 (30%)

Query: 99  HTGDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEHHGFNAVVHNSAPSVHPIAAH 158
           H G H   H +      HG +                  HHG +   H    S H  A H
Sbjct: 502 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHH 561

Query: 159 HHH 161
            HH
Sbjct: 562 GHH 564



 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 78  YAGHDEYAHPKYDFAYSVADPHTGDHKSQHESRDGDSVHGSYS 120
           +  H   AH  +  A+     H G H   H+ ++    HG +S
Sbjct: 677 HGAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHS 719


>Z11505-7|CAA77581.1|  918|Caenorhabditis elegans Hypothetical
           protein F59B2.12 protein.
          Length = 918

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 84  YAHPKYDFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEHHGFN 142
           +A PK D + +     +  HK  H+S    S   S ++V  DG  + +   +++  G+N
Sbjct: 55  FAMPKLDASKAAMVHSSSSHKGHHQSSGSSSNTHSLTVVGADG--KNITENSEKKDGYN 111


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.131    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,562
Number of Sequences: 27539
Number of extensions: 105364
Number of successful extensions: 247
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 13
length of query: 162
length of database: 12,573,161
effective HSP length: 76
effective length of query: 86
effective length of database: 10,480,197
effective search space: 901296942
effective search space used: 901296942
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)