Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000276-TA|BGIBMGA000276-PA|IPR000618|Insect cuticle
protein
         (161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   1.0  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    25   4.1  
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    25   5.5  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   7.2  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 104 KSQHESRDGDSVHGSYSLVQPDGS 127
           K+  +S  GDS+HG YS+++  G+
Sbjct: 395 KAIRDSMVGDSIHGLYSILETSGA 418


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 74  PLAHYSGHHEYAHPK-YDFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDG 126
           P  H  G  +  H   +D+ +   D H  DH S   S +  S       +Q  G
Sbjct: 4   PFLHKGGSDDSTHHHTHDYDHHNHDHHGHDHHSHDSSSNSSSEAARLQFIQEHG 57


>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 110 RDGDSVHGSYSLVQPDGSVRKVDYTAD----EHHGF--NAIVHNSAPSVHPIAHHHH 160
           R G+    S   V  DG+++    T D       G+  ++ +H + P V  I H+H+
Sbjct: 123 RYGEITASSLIKVDEDGNIKHPGVTGDVFGINRAGYVIHSAIHRARPDVKSIMHNHY 179


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 77  HYSGHHEYAHPKYDFAYSVADPHTGDHKSQHE 108
           H+S H E  H ++D +   +    GD +S+HE
Sbjct: 31  HHSRHRESKHGRHDRSERPSSREAGD-RSRHE 61


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,187
Number of Sequences: 5004
Number of extensions: 20040
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 4
length of query: 161
length of database: 2,362,478
effective HSP length: 68
effective length of query: 93
effective length of database: 2,022,206
effective search space: 188065158
effective search space used: 188065158
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)