Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000276-TA|BGIBMGA000276-PA|IPR000618|Insect cuticle
protein
         (161 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.60 
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)                      31   0.60 
SB_50198| Best HMM Match : Frizzled (HMM E-Value=0)                    30   0.79 
SB_36361| Best HMM Match : ITAM (HMM E-Value=3.5)                      30   0.79 
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_27284| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15)          28   4.2  
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)                      27   5.6  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_20744| Best HMM Match : CH (HMM E-Value=0.92)                       27   5.6  
SB_45775| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                27   9.8  
SB_43028| Best HMM Match : Cornifin (HMM E-Value=0.0019)               27   9.8  
SB_34999| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5)                   27   9.8  
SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 90   DFAYSVADPHTGDHKSQHESRDGDSV--HGSYSLVQPDGSVRKVDYTAD 136
            D  +   +   GD   +H+  DGDSV  H  Y+    D  VR  DY  D
Sbjct: 1863 DVRHDEYNDEDGDSDVRHDDYDGDSVVRHDDYNDDNGDSDVRHDDYDGD 1911


>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
          Length = 330

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 103 HKSQHESRD-GDSVHG---SYSLVQPDGSVR-KVDYTADEHHGFNAI-VHNSAPSVHPIA 156
           HKS H SR  G S  G   SYS     GS R K  ++   H   ++   H S+ S +   
Sbjct: 165 HKSHHSSRQHGHSKSGRTSSYSSDSSPGSGREKSSHSRSVHKSHSSKHSHPSSHSTNRSH 224

Query: 157 HHHHY 161
           HHHH+
Sbjct: 225 HHHHH 229


>SB_50198| Best HMM Match : Frizzled (HMM E-Value=0)
          Length = 654

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 119 YSLVQPDGSVRKVDYTADEHHGFNAI-VHNSAPSVHPIAHH 158
           YS  +   + +KVDY+A      N++ VH   PSV P+ HH
Sbjct: 575 YSKRKGGEAKKKVDYSAGSAPPKNSLQVHMPPPSVQPVYHH 615


>SB_36361| Best HMM Match : ITAM (HMM E-Value=3.5)
          Length = 208

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 73  TPLAHYSGHHEYAH-PKYDFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGS 127
           T + HY G + Y H P+Y    +          + +E   GD+ +G+Y  +Q   S
Sbjct: 90  TAIRHYIGKYRYNHTPRYRGISAQPYATISKQDNTYEKLQGDTANGNYEQIQAKNS 145


>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1208

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 77  HYSGHHEYAHPKYDFAYSVADPHTGDHKSQHESRD--GDSVHGSYSLVQPDG--SVRKVD 132
           HY+ HH     + ++  S ADP   D    ++ RD    ++  S S    DG  +VR + 
Sbjct: 174 HYNAHHSGKVKREEWDRSRADPRIEDLDRDYDRRDIGRTNIQESTSRRDRDGYDAVRDIR 233

Query: 133 YTADEHH 139
            T D  H
Sbjct: 234 STRDSRH 240


>SB_27284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 75  LAHYSGHHEYAHPKYDFAYSVADPHTGDHKSQHESRDGDSVHG 117
           ++ Y+  H Y+HPK D A    D   GD        D D   G
Sbjct: 1   MSMYNASHVYSHPKDDGAVGDDDSAVGDDNGDDGDVDDDGGDG 43


>SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15)
          Length = 846

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 84  YAHPKYDFAYSVADPHTGDHKSQHESRDGD-SVHGSYS 120
           Y    YD  Y+VA   +G +++ H +R  D SV G YS
Sbjct: 681 YTAQVYDAVYAVAHATSGLYRNGHVTRGNDWSVVGEYS 718


>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
          Length = 244

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 101 GDHKSQH---ESRDGDSVHGSYSLVQPDGSVRKVDYTADEHHGFNAIVHNSAPSVHPIAH 157
           G H+ QH   E   G       S  +  G+ R+   T +E HG +   H +    H    
Sbjct: 48  GTHRQQHVTYEEEHGTHRQQHVSYEEEHGTHRQQHVTYEEEHGTHRQQHVTYEEEHGTHR 107

Query: 158 HHH 160
            HH
Sbjct: 108 QHH 110



 Score = 27.1 bits (57), Expect = 7.4
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 82  HEYAHPKYDFAYSVADPHTGDHKSQH---ESRDGDSVHGSYSLVQPDGSVRKVDYTADEH 138
           +E  H  +   +   +   G H+ QH   E   G       +  +  G+ R+   T +E 
Sbjct: 71  YEEEHGTHRQQHVTYEEEHGTHRQQHVTYEEEHGTHRQHHVTYEEEHGTHRQQHVTYEEE 130

Query: 139 HGFNAIVHNSAPSVHPIAHHHH 160
           HG +   H +    H     HH
Sbjct: 131 HGTHRQQHVTHKEEHGTHRQHH 152



 Score = 27.1 bits (57), Expect = 7.4
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 82  HEYAHPKYDFAYSVADPHTGDHKSQH---ESRDGDSVHGSYSLVQPDGSVRKVDYTADEH 138
           H+  H  +   +   +   G H+ QH   E   G       +  +  G+ R+   T +E 
Sbjct: 141 HKEEHGTHRQHHVTYEEEHGTHRQQHVTYEEEHGTHRQHHVTYEEEHGTHRQQHVTYEEE 200

Query: 139 HGFNAIVHNSAPSVHPIAHHHH 160
           HG +   H +    H     HH
Sbjct: 201 HGTHRQHHVTYEEKHGTHRQHH 222


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)

Query: 90   DFAYSVADPHTGDHK 104
            DFAY   DPHT  HK
Sbjct: 1425 DFAYVARDPHTSKHK 1439


>SB_20744| Best HMM Match : CH (HMM E-Value=0.92)
          Length = 1103

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 73  TPLAHYSGHHEYAHPKYDFAYSVA 96
           TP+ H+  HH Y HP  + A   A
Sbjct: 490 TPVLHHHYHHHYHHPVTEIASGTA 513


>SB_45775| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 584

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 80  GHHEYAHPKYDFAY-SVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEH 138
           G+HE AH  Y+  +  +A PH G H+  H     +  HG +++  P G         +  
Sbjct: 307 GYHEVAHGYYEVPHVYLAAPH-GYHEMPHGYH--EVPHGYHAV--PHGYNEVPHGYHEVA 361

Query: 139 HGFNAIVH--NSAP-SVHPIAHHHH 160
           HG+  + H   +AP   H + H +H
Sbjct: 362 HGYYEVPHLYLAAPHGYHEMPHGYH 386


>SB_43028| Best HMM Match : Cornifin (HMM E-Value=0.0019)
          Length = 512

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 113 DSVHGSYS-LVQPDGS-VRKVDYTADEHHGFNAIVH-NSAPSVHP 154
           D +H  Y+ +V PD + +   DYT   H G+  I+H +    +HP
Sbjct: 43  DIIHPDYTGIVHPDYTGIIHPDYTGIIHSGYTDIIHPDYTGIIHP 87


>SB_34999| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 91  FAYSVADPHTGDHKSQHESRDG--DSVHGSYSLVQPDGSVR 129
           F +     H GDH+S HE + G  D   G ++  +P+  +R
Sbjct: 97  FFFFAVSQH-GDHQSHHEEKRGLQDLAQGLHACARPEKLIR 136


>SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5)
          Length = 473

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 90  DFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEHHGFNAIVHNSA 149
           D+A  V D   GD+    +S  GD V  S S     G   +V Y A    G  AI  +S 
Sbjct: 183 DYA-RVCDSFQGDYARVSDSFQGDYVRVSDSFQSFQGDYARVRYAAAGFFGRQAI-DDSR 240

Query: 150 PSVHPIAHH 158
           P++     H
Sbjct: 241 PTLEESRLH 249


>SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1194

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 113 DSVHGSYSLVQPDGSVRKVDYTADEHHGFNAIVHNSAPSVHPIAH 157
           +S+  SYS++ PD S    D+  + HH     V  +      +AH
Sbjct: 847 ESIQQSYSVILPDESDVSPDHYHEYHHTGEVYVDENGNEYVNVAH 891


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.131    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,284,607
Number of Sequences: 59808
Number of extensions: 156444
Number of successful extensions: 500
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 24
length of query: 161
length of database: 16,821,457
effective HSP length: 77
effective length of query: 84
effective length of database: 12,216,241
effective search space: 1026164244
effective search space used: 1026164244
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)