Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000276-TA|BGIBMGA000276-PA|IPR000618|Insect cuticle
protein
         (161 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF048730-1|AAC39664.1|  726|Homo sapiens cyclin T1 protein.            29   7.5  
AF045161-1|AAC39638.1|  726|Homo sapiens cyclin T protein.             29   7.5  
U81511-2|AAC23705.1|  268|Homo sapiens HOXA-9B protein.                29   9.9  

>AF048730-1|AAC39664.1|  726|Homo sapiens cyclin T1 protein.
          Length = 726

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 77  HYSGHHEYAHPKYDFAYSVADPHTGDHKSQHESRDGDSVHGSYSL 121
           H+  HH + H          +   GD K  H S+  +  H +YSL
Sbjct: 519 HHHNHHSHKHSHSQLPVGTGNKRPGDPK--HSSQTSNLAHKTYSL 561


>AF045161-1|AAC39638.1|  726|Homo sapiens cyclin T protein.
          Length = 726

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 77  HYSGHHEYAHPKYDFAYSVADPHTGDHKSQHESRDGDSVHGSYSL 121
           H+  HH + H          +   GD K  H S+  +  H +YSL
Sbjct: 519 HHHNHHSHKHSHSQLPVGTGNKRPGDPK--HSSQTSNLAHKTYSL 561


>U81511-2|AAC23705.1|  268|Homo sapiens HOXA-9B protein.
          Length = 268

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 8/17 (47%), Positives = 14/17 (82%)

Query: 145 VHNSAPSVHPIAHHHHY 161
           VH  AP+++P+ +HHH+
Sbjct: 68  VHARAPTLYPLVYHHHH 84


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.317    0.131    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,770,708
Number of Sequences: 224733
Number of extensions: 580314
Number of successful extensions: 4614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4612
Number of HSP's gapped (non-prelim): 6
length of query: 161
length of database: 73,234,838
effective HSP length: 84
effective length of query: 77
effective length of database: 54,357,266
effective search space: 4185509482
effective search space used: 4185509482
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)