Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000276-TA|BGIBMGA000276-PA|IPR000618|Insect cuticle
protein
         (161 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79580.3 68414.m09279 no apical meristem (NAM) family protein...    32   0.16 
At1g79580.2 68414.m09278 no apical meristem (NAM) family protein...    32   0.16 
At1g79580.1 68414.m09277 no apical meristem (NAM) family protein...    32   0.16 
At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family...    29   1.1  
At1g14690.1 68414.m01756 microtubule associated protein (MAP65/A...    29   1.1  
At2g07710.1 68415.m00998 hypothetical protein                          28   3.5  
At1g69990.1 68414.m08055 leucine-rich repeat transmembrane prote...    27   4.6  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    27   8.0  

>At1g79580.3 68414.m09279 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 136 DEHHGFNAIVHNSAPSV-HPIAHHHHY 161
           D HH  ++  +N +P + HP+ HHHH+
Sbjct: 195 DHHHHIDSNSNNHSPLILHPLDHHHHH 221


>At1g79580.2 68414.m09278 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 136 DEHHGFNAIVHNSAPSV-HPIAHHHHY 161
           D HH  ++  +N +P + HP+ HHHH+
Sbjct: 195 DHHHHIDSNSNNHSPLILHPLDHHHHH 221


>At1g79580.1 68414.m09277 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 136 DEHHGFNAIVHNSAPSV-HPIAHHHHY 161
           D HH  ++  +N +P + HP+ HHHH+
Sbjct: 195 DHHHHIDSNSNNHSPLILHPLDHHHHH 221


>At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family
           protein
          Length = 532

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 87  PKYDF-AYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEHHGFNAIV 145
           P+Y   AY+ + P    ++S       ++VHGSY           V Y        + + 
Sbjct: 458 PQYGVPAYTTSPPTIYSNRSPPYQYSPEAVHGSYQ-------TSPVSYPTAYGTYCSPVA 510

Query: 146 HNSAPSVHPIAHHHHY 161
               P  HP  HHHH+
Sbjct: 511 APPPPVYHPHPHHHHH 526


>At1g14690.1 68414.m01756 microtubule associated protein
           (MAP65/ASE1) family protein low similarity to SP|P32380
           NUF1 protein (Spindle poly body spacer protein SPC110)
           {Saccharomyces cerevisiae}, smooth muscle myosin heavy
           chain [Homo sapiens] GI:4417214; contains Pfam profile
           PF03999: Microtubule associated protein (MAP65/ASE1
           family)
          Length = 707

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 90  DFAYSVADPHTGDHKSQHESR---DGDSVHGSYSLVQPDGSVRKVDYTADEHHGFNAIV 145
           DF  +V++ H   H++ HE       D++ G + ++    + R V +   + H  NAI+
Sbjct: 191 DFGQTVSEVHPSLHRTDHEQSTNISDDTLDGLHHMIHKLKTERSVRFQKVDKHACNAIL 249


>At2g07710.1 68415.m00998 hypothetical protein
          Length = 150

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 146 HNSAPSVHPIAHHHHY 161
           H+ +PS+ P+A HHH+
Sbjct: 55  HHFSPSLDPVAEHHHH 70


>At1g69990.1 68414.m08055 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor-like protein kinase
           GI:8777368 from [Arabidopsis thaliana]
          Length = 591

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/66 (24%), Positives = 27/66 (40%)

Query: 90  DFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEHHGFNAIVHNSA 149
           DF   V D   G   S  +S+D    +G +  V P+ S   V   + + +GF  ++    
Sbjct: 427 DFDARVIDYGLGKLVSSQDSKDSSFSNGKFGYVAPEYSSTMVASLSGDVYGFGIVLLEIV 486

Query: 150 PSVHPI 155
               P+
Sbjct: 487 TGQKPV 492


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 143 AIVHNSAPSVHPIAHHHHY 161
           ++ H S+   H  +HHHH+
Sbjct: 435 SVAHESSEEPHEFSHHHHH 453


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.131    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,694
Number of Sequences: 28952
Number of extensions: 104597
Number of successful extensions: 263
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 9
length of query: 161
length of database: 12,070,560
effective HSP length: 76
effective length of query: 85
effective length of database: 9,870,208
effective search space: 838967680
effective search space used: 838967680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)