Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000275-TA|BGIBMGA000275-PA|IPR000618|Insect cuticle
protein
         (179 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14690.1 68414.m01756 microtubule associated protein (MAP65/A...    29   1.8  
At5g61680.1 68418.m07739 pectinesterase family protein contains ...    28   3.1  
At4g19200.1 68417.m02833 proline-rich family protein contains pr...    27   5.5  
At1g69990.1 68414.m08055 leucine-rich repeat transmembrane prote...    27   5.5  

>At1g14690.1 68414.m01756 microtubule associated protein
           (MAP65/ASE1) family protein low similarity to SP|P32380
           NUF1 protein (Spindle poly body spacer protein SPC110)
           {Saccharomyces cerevisiae}, smooth muscle myosin heavy
           chain [Homo sapiens] GI:4417214; contains Pfam profile
           PF03999: Microtubule associated protein (MAP65/ASE1
           family)
          Length = 707

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 107 DFAYSVADPHTGDHKSQHESR---DGDSVHGSYSLVQPDGSVRKVDYTADEHHGFNAVV 162
           DF  +V++ H   H++ HE       D++ G + ++    + R V +   + H  NA++
Sbjct: 191 DFGQTVSEVHPSLHRTDHEQSTNISDDTLDGLHHMIHKLKTERSVRFQKVDKHACNAIL 249


>At5g61680.1 68418.m07739 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 338

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 93  GHYSGHDEYAHPKYDFAY----SVADPHTGDHKSQHESRDGDSVHGSYSLVQPDG-SVRK 147
           G Y G    +HPK  +AY    SV +P +G  +++   RD    +G Y          ++
Sbjct: 247 GIYLGRSWMSHPKVVYAYTDMSSVVNP-SGWQENREAGRDKTVFYGEYKCTGTGSHKEKR 305

Query: 148 VDYTAD 153
           V YT D
Sbjct: 306 VKYTQD 311


>At4g19200.1 68417.m02833 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 179

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 7/47 (14%)

Query: 91  PLGHYSGHDEYAH-PKYDFAYSVADPHTGDHKSQHESRDGDSVHGSY 136
           P GH  GH  Y H P + F       H G  K +H    G   HG +
Sbjct: 120 PYGHAVGHGGYGHAPAHGFG------HGGHGKFKHGKHGGKFKHGKH 160


>At1g69990.1 68414.m08055 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor-like protein kinase
           GI:8777368 from [Arabidopsis thaliana]
          Length = 591

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 107 DFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEHHGFNAVV 162
           DF   V D   G   S  +S+D    +G +  V P+ S   V   + + +GF  V+
Sbjct: 427 DFDARVIDYGLGKLVSSQDSKDSSFSNGKFGYVAPEYSSTMVASLSGDVYGFGIVL 482


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.133    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,321
Number of Sequences: 28952
Number of extensions: 91002
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 5
length of query: 179
length of database: 12,070,560
effective HSP length: 77
effective length of query: 102
effective length of database: 9,841,256
effective search space: 1003808112
effective search space used: 1003808112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)