GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000275-TA|BGIBMGA000275-PA|IPR000618|Insect cuticle
protein
         (179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    28   0.69 
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   1.2  

>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 89  AAPLGHYSGHDEYAHPK-YDFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDG 143
           A P  H  G D+  H   +D+ +   D H  DH S   S +  S       +Q  G
Sbjct: 2   AIPFLHKGGSDDSTHHHTHDYDHHNHDHHGHDHHSHDSSSNSSSEAARLQFIQEHG 57


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 121 KSQHESRDGDSVHGSYSLVQPDGS 144
           K+  +S  GDS+HG YS+++  G+
Sbjct: 395 KAIRDSMVGDSIHGLYSILETSGA 418


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,577
Number of Sequences: 5004
Number of extensions: 17198
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 2
length of query: 179
length of database: 2,362,478
effective HSP length: 69
effective length of query: 110
effective length of database: 2,017,202
effective search space: 221892220
effective search space used: 221892220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)