GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000275-TA|BGIBMGA000275-PA|IPR000618|Insect cuticle
protein
         (179 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z11505-7|CAA77581.1|  918|Caenorhabditis elegans Hypothetical pr...    28   3.3  

>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 94  HYSGHDEYAHPKYDFAYSVADPHTGDHKSQHESRDGDSVHGSYS 137
           H+  H   AH  +  A+     H G H   H+ ++    HG +S
Sbjct: 676 HHGAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHS 719


>Z11505-7|CAA77581.1|  918|Caenorhabditis elegans Hypothetical
           protein F59B2.12 protein.
          Length = 918

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 101 YAHPKYDFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEHHGFN 159
           +A PK D + +     +  HK  H+S    S   S ++V  DG  + +   +++  G+N
Sbjct: 55  FAMPKLDASKAAMVHSSSSHKGHHQSSGSSSNTHSLTVVGADG--KNITENSEKKDGYN 111


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.133    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,338
Number of Sequences: 27539
Number of extensions: 94062
Number of successful extensions: 165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 6
length of query: 179
length of database: 12,573,161
effective HSP length: 77
effective length of query: 102
effective length of database: 10,452,658
effective search space: 1066171116
effective search space used: 1066171116
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)