Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000274-TA|BGIBMGA000274-PA|undefined
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    31   0.36 
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    29   1.1  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    27   5.8  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    27   5.8  

>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 123 NTGDHKTQHELSDGFNAVVKKFLP-VNVEKKIEQHEKSHPDPPCHE 167
           + G+     E+  GF++V    +P +N  K + Q EK++P PP  E
Sbjct: 165 SVGNSSDFREVEPGFHSVQVDLIPKINFSKSLMQLEKTNPLPPVDE 210


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 3/26 (11%)

Query: 168 VKNEQLKVET---KTEHSESHHAPIV 190
           VK+E L+ ET   KTEH++S+H P V
Sbjct: 129 VKDEGLRTETIVKKTEHADSNHQPAV 154


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 46  APSIAVAGSQLAQISAAPVGSVVPN 70
           APS    GS    ISAAP+ +++ N
Sbjct: 102 APSTTAMGSSSQNISAAPMANIISN 126


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 54  SQLAQISA-APVGSVVPNLVAPCGTPCIYPGQSIAPA 89
           SQL + S   P+   V NL+ PC +P ++  +   PA
Sbjct: 662 SQLVEASGNEPLPDFVVNLIQPCLSPALWDSKGNIPA 698


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.130    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,126,144
Number of Sequences: 5004
Number of extensions: 40155
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 5
length of query: 380
length of database: 2,362,478
effective HSP length: 74
effective length of query: 306
effective length of database: 1,992,182
effective search space: 609607692
effective search space used: 609607692
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)