Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000274-TA|BGIBMGA000274-PA|undefined
         (380 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)                   32   0.89 
SB_47440| Best HMM Match : SURF6 (HMM E-Value=0.96)                    31   1.6  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.6  
SB_5448| Best HMM Match : C1q (HMM E-Value=0.032)                      29   4.7  
SB_23951| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  

>SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)
          Length = 906

 Score = 31.9 bits (69), Expect = 0.89
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 106 NKEDAAGYEYSY---LVYDE-NTGDHKTQHELSD---GFNAVVKKFLPVNVEKKIEQHEK 158
           N+ED + Y+Y Y     YD+ N G H  Q +      G+   +KK  P          E+
Sbjct: 665 NREDYSHYDYDYDYDYDYDKVNDGQHGKQRQHQPALLGWTGSIKKIPPRPSSDLTSDQEE 724

Query: 159 SHPDPPCHE 167
           S  DPP  E
Sbjct: 725 SGSDPPSRE 733


>SB_47440| Best HMM Match : SURF6 (HMM E-Value=0.96)
          Length = 279

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 107 KEDAAGYEYSYLVYDENTGDHKTQHELSDGFNAVVKKFLPVNVEKKIEQHEKSHPDPPCH 166
           KE+++G E   L   +NTG+              VK  LP   EKK E  E     P   
Sbjct: 33  KENSSGQEKEIL---QNTGERFKNRTSKKRVTDKVKDKLPQTPEKKAEVLETLINSPRTR 89

Query: 167 EVKNEQLKVETKTEHSESH 185
           ++ + Q  V+T  E  ES+
Sbjct: 90  KILSRQGVVKTPEEEKESN 108


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 32  GGREVVPVEYLQYGAPSIAVAGSQLAQISAAPVGSVVPNLVAPCGTPCIYPGQSIAPATT 91
           GG+ +   E     A +     + L + +AAP  +V+P   A  G+  + P  ++AP TT
Sbjct: 182 GGKSIAAQETTSASANTAPPGTTVLPESTAAPGSTVLPESTAAPGS-TVLPESTVAPGTT 240


>SB_5448| Best HMM Match : C1q (HMM E-Value=0.032)
          Length = 524

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 14  VSAINVVTGASFSKVFVQGGREVVP-VEYLQYGAPSIAVAG 53
           V+AI ++TG+ FS VF+ G R   P + Y   G   +A +G
Sbjct: 198 VAAIRILTGSGFSAVFISGLRSNPPFLSYPLNGTQYLANSG 238


>SB_23951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 140 VVKKFLPVNVEKKIEQHEKSHPDP-PCHEVK 169
           V K+ +PV V +K EQH+ S  D  PCH ++
Sbjct: 161 VEKRLVPVAVWRKGEQHQISMEDVIPCHNIE 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.130    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,222,900
Number of Sequences: 59808
Number of extensions: 289529
Number of successful extensions: 615
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 5
length of query: 380
length of database: 16,821,457
effective HSP length: 83
effective length of query: 297
effective length of database: 11,857,393
effective search space: 3521645721
effective search space used: 3521645721
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)