Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000274-TA|BGIBMGA000274-PA|undefined
         (380 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ...    30   2.2  
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi...    29   3.9  
At1g53210.1 68414.m06031 sodium/calcium exchanger family protein...    29   5.2  
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /...    29   6.8  

>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
           (beta prime), putative contains 7 WD-40 repeats
           (PF00400) (1 weak); similar to (SP:O55029) Coatomer
           beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
           (SP:O55029) [Mus musculus]; similar to GI:298096 from
           [Homo sapiens]
          Length = 926

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 145 LPVNVEKKIEQHEKSHPDPPCHEVKNEQLKVETKTEHSESHH 186
           L V  E+ +E  +  H +    E  NEQ   +   EH E HH
Sbjct: 843 LQVEEEESLENGDMDHEEVVAEENGNEQRNEDDVAEHVEEHH 884


>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 682

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 13  GVSAINVVTGASFSKVFVQGGREVVPVEYLQYGAPSIAVAGSQLAQISAAPVGSVVPNLV 72
           G S+      AS S     G     P    Q+   S +   S L+Q S    GSV  NL 
Sbjct: 48  GSSSAAATPAASGSSSSSSGSASGKPAVTSQFARRSHSGELSGLSQTSPVKPGSVNRNLK 107

Query: 73  ------APCGTPCIYPGQSIAPATTN 92
                 A  GTP IY G   +P   N
Sbjct: 108 PGHRRSASAGTPLIYSGLGFSPVNNN 133


>At1g53210.1 68414.m06031 sodium/calcium exchanger family protein /
           calcium-binding EF hand family protein contains Pfam
           profiles: PF01699 sodium/calcium exchanger protein,
           PF00036 EF hand
          Length = 585

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 20/86 (23%), Positives = 30/86 (34%)

Query: 33  GREVVPVEYLQYGAPSIAVAGSQLAQISAAPVGSVVPNLVAPCGTPCIYPGQSIAPATTN 92
           G EV   +++   A  + + G+ +A   A P+   V N  A  G P  +      P  TN
Sbjct: 419 GGEVADPKWITIKAALLLLLGAAIAAAFADPLVDTVNNFSAATGIPSFFISFIALPLATN 478

Query: 93  XXXXXXXXXXXXXNKEDAAGYEYSYL 118
                         K   A   +S L
Sbjct: 479 SSEAVSAIIFASRKKIRTASLTFSEL 504


>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
           (Alpha-tocopherol associated protein) (TAP) (bTAP)
           (Fragment) (SP:P58875)  {Bos taurus}
          Length = 683

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 150 EKKIEQHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAP 188
           E+K+E+ +    +    EVK E+  +E +T+  E   AP
Sbjct: 126 EEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEKSAAP 164


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.130    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,669,746
Number of Sequences: 28952
Number of extensions: 198331
Number of successful extensions: 401
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 4
length of query: 380
length of database: 12,070,560
effective HSP length: 82
effective length of query: 298
effective length of database: 9,696,496
effective search space: 2889555808
effective search space used: 2889555808
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)