GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000274-TA|BGIBMGA000274-PA|undefined
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    30   3.5  
04_01_0382 - 5076673-5077774,5078122-5078186                           29   8.2  

>09_02_0022 +
           3065644-3065953,3066048-3067162,3067261-3067437,
           3067535-3067648,3068614-3068718,3068930-3069064,
           3069148-3069203,3069277-3069382,3069515-3069631,
           3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 7   VAVFILGVSAINVVTGASFSKVFVQGGREVVPVEYLQYGAPSIAVA--GSQLAQISAA 62
           V    +GV  +  VT  +F ++F +GG   + +  L  G P +  A  G QLA +S A
Sbjct: 544 VKAVAVGVGWVAAVTTLNFLRIFTEGG---LQMHILSVGGPVVTAAGHGDQLAIVSHA 598


>04_01_0382 - 5076673-5077774,5078122-5078186
          Length = 388

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 135 DGFNAVVKKFLPVNVEKKIEQHEKSHPDP--PCHEVKNEQLKVETKTEHSE 183
           DG N +V+  LP  +EKK+   ++  PD     H++ +++ K +    HSE
Sbjct: 273 DGRNKLVEYRLPPKIEKKVVNEQRYVPDTRYVLHDI-DQEAKEQALLYHSE 322


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.130    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,258,540
Number of Sequences: 37544
Number of extensions: 256194
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 3
length of query: 380
length of database: 14,793,348
effective HSP length: 83
effective length of query: 297
effective length of database: 11,677,196
effective search space: 3468127212
effective search space used: 3468127212
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)