Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000273-TA|BGIBMGA000273-PA|IPR000618|Insect cuticle
protein
         (117 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37179| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_17577| Best HMM Match : fn3 (HMM E-Value=0)                         26   6.9  
SB_50040| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.1  
SB_30612| Best HMM Match : HSP9_HSP12 (HMM E-Value=6.7)                26   9.1  
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)              26   9.1  

>SB_37179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 85  EARDGDVVKGEYSLLQPDGSFRKVTYTA 112
           +A+DGD+ K + SLL     F KV +TA
Sbjct: 69  KAQDGDIEKWDLSLLTTVMMFSKVGFTA 96


>SB_17577| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1690

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 60  YHAHPKYDYSYSVSDPHTGDHKTQHEARD 88
           Y+AH  YD +++  DP   D +  H + D
Sbjct: 226 YNAHLNYDVAFNPKDPCPEDGEGAHSSMD 254


>SB_50040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 67  DYSYSVSDPHTGDHKTQHEARDGDVVKGEYSL 98
           D  + V D    D+ T    R+G + KG YSL
Sbjct: 125 DSGWVVWDDERNDNGTNRNRRNGTLPKGRYSL 156


>SB_30612| Best HMM Match : HSP9_HSP12 (HMM E-Value=6.7)
          Length = 184

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 81  KTQHEARDGDVVKGEYSLLQPDGSFRKVTYT 111
           K Q     GD+V+   S L+PD    K T T
Sbjct: 77  KPQRSIDKGDIVRSSDSCLKPDARHNKQTQT 107


>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
          Length = 1099

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 57  HVDYHAHPKYDYSYSVSD-PHTGDHKTQHEAR 87
           HV YH H  +  +Y  SD PH    +   EAR
Sbjct: 558 HVYYHGHHDHLLAYGKSDLPHKKTEEVTPEAR 589


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.132    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,130
Number of Sequences: 59808
Number of extensions: 103673
Number of successful extensions: 223
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 5
length of query: 117
length of database: 16,821,457
effective HSP length: 73
effective length of query: 44
effective length of database: 12,455,473
effective search space: 548040812
effective search space used: 548040812
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 54 (25.8 bits)