Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000273-TA|BGIBMGA000273-PA|IPR000618|Insect cuticle
protein
         (117 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25100.1 68416.m03135 cell division control protein-related c...    28   1.8  
At3g03080.1 68416.m00304 NADP-dependent oxidoreductase, putative...    27   2.4  
At2g43910.1 68415.m05458 thiol methyltransferase, putative simil...    26   5.6  
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ...    26   7.5  
At2g43920.1 68415.m05459 thiol methyltransferase, putative simil...    25   9.9  
At2g30690.1 68415.m03742 expressed protein contains Pfam profile...    25   9.9  

>At3g25100.1 68416.m03135 cell division control protein-related
           contains weak similarity to cell division control
           protein 45 homolog (Suppressor of nda4 protein)
           (Swiss-Prot:O74113) [Schizosaccharomyces pombe]
          Length = 596

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 55  DTHVDYHAHPKYDYSYSVSDPHTGDHKTQHE-ARDGDVVK 93
           D+H   H H   DY+  V   HT D + Q + A D DV+K
Sbjct: 115 DSHRPIHLHNLSDYNEQVVVLHTDDDERQGDLAYDFDVLK 154


>At3g03080.1 68416.m00304 NADP-dependent oxidoreductase, putative
           similar to probable NADP-dependent oxidoreductase
           (zeta-crystallin homolog)  P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana; similar to allyl alcohol
           dehydrogenase [Nicotiana tabacum] GI:6692816
          Length = 350

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 64  PKYDYSYS-VSDPHTGDHKTQHEARDGDVVKGEYSLLQPDGSFRKVTYT 111
           P Y +S S V D    D+K + +   G V  GEYSL+ PD S  K+ +T
Sbjct: 83  PIYGFSVSKVIDSGHPDYK-KGDLLWGLVGWGEYSLITPDFSHYKIQHT 130


>At2g43910.1 68415.m05458 thiol methyltransferase, putative similar
           to thiol methyltransferase 1 GI:14583119 from [Brassica
           oleracea]
          Length = 227

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 93  KGEYSLLQPDGSFRKVTYTADDHNG 117
           K  Y LL+PDG    + Y   DH G
Sbjct: 155 KSMYELLKPDGELITLMYPITDHVG 179


>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
          contains Pfam domain, PF00642: Zinc finger
          C-x8-C-x5-C-x3-H type (and similar)
          Length = 381

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 59 DYHAHPKYDYSYSVSDPHTGDHKTQHE 85
          DY     Y Y     DP+ GDH   +E
Sbjct: 39 DYKEQKDYCYDSDSEDPYAGDHFRMYE 65


>At2g43920.1 68415.m05459 thiol methyltransferase, putative similar
           to thiol methyltransferase 1 GI:14583119 from [Brassica
           oleracea]
          Length = 227

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 93  KGEYSLLQPDGSFRKVTYTADDHNG 117
           K  + LL+PDG    + Y   DH G
Sbjct: 155 KSMHELLKPDGELITLMYPMTDHEG 179


>At2g30690.1 68415.m03742 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593; expression
           supported by MPSS
          Length = 788

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 70  YSVSDPHTGDHKTQHEARDGDVVKGEYSLLQPDGSFRKVTYTADDHNG 117
           +S  + H GDH+        ++ K E SL   D    K+T T +  NG
Sbjct: 569 HSAKEEH-GDHEETEPLTSLNISKEEPSLEHSDKDSLKITETRNTSNG 615


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.132    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,097
Number of Sequences: 28952
Number of extensions: 65297
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 6
length of query: 117
length of database: 12,070,560
effective HSP length: 72
effective length of query: 45
effective length of database: 9,986,016
effective search space: 449370720
effective search space used: 449370720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 53 (25.4 bits)