GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000273-TA|BGIBMGA000273-PA|IPR000618|Insect cuticle
protein
         (117 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0409 - 3096372-3097052,3097324-3098652                           28   1.7  
03_06_0528 - 34526038-34526164,34526250-34526500,34526584-345268...    27   3.8  
01_05_0532 - 22992520-22992879,22993323-22993403,22993565-229936...    26   8.8  

>11_01_0409 - 3096372-3097052,3097324-3098652
          Length = 669

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 72  VSDPHTGDHKTQHEARDGDVVKGEYSLLQPDGSF 105
           V + H G H   H+++   V+ G Y  +  DGSF
Sbjct: 428 VYNHHQGHHTVIHDSQRNLVLTGPYRAISADGSF 461


>03_06_0528 -
           34526038-34526164,34526250-34526500,34526584-34526804,
           34526963-34527017
          Length = 217

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 56  THVDYHAHPKYDYSY--SVSDPHTGDHKTQHEARDGD 90
           T  D H +  Y +S   S + PH GDH+ Q  +   D
Sbjct: 124 TRADDHPYQSYSHSEPPSPAAPHAGDHRHQRSSFAAD 160


>01_05_0532 -
           22992520-22992879,22993323-22993403,22993565-22993639,
           22994140-22994301
          Length = 225

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 56  THVDYHAHPKYDYSYSVSDPHTGDHKTQHEA 86
           T  D  +H +++  Y  +DPH      QH A
Sbjct: 97  TAADIMSHIQHELDYGGNDPHVSPRVHQHSA 127


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.132    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,801
Number of Sequences: 37544
Number of extensions: 83395
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 3
length of query: 117
length of database: 14,793,348
effective HSP length: 73
effective length of query: 44
effective length of database: 12,052,636
effective search space: 530315984
effective search space used: 530315984
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 54 (25.8 bits)