Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000272-TA|BGIBMGA000272-PA|IPR000618|Insect cuticle
protein, IPR000583|Glutamine amidotransferase, class-II
         (297 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       35   6e-04
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.8  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 106 IPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKGEYSLLQ-PDGSIR 164
           +P   E S  ++D+     +  Y VE  +   ++ +  T DG +V GEY ++   DGS+R
Sbjct: 177 LPSKEEVSKKIDDNQ----KVGYVVEGRNYRKYRVEERTSDGFIV-GEYGVVSHDDGSLR 231

Query: 165 KVEYTAD 171
            V YTAD
Sbjct: 232 GVRYTAD 238


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 152 GEYSLLQPDGSIRKVEYTADHHNGFSA 178
           G Y    P+G I + + +    NG+SA
Sbjct: 142 GSYDPYSPNGKIGREDLSPSSLNGYSA 168


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.130    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,244
Number of Sequences: 317
Number of extensions: 2921
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 297
length of database: 114,650
effective HSP length: 56
effective length of query: 241
effective length of database: 96,898
effective search space: 23352418
effective search space used: 23352418
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)