GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000272-TA|BGIBMGA000272-PA|IPR000618|Insect cuticle
protein, IPR000583|Glutamine amidotransferase, class-II
         (297 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.20 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.81 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.3  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 228 VHSTPVVHSAPLIHSAPVVHSAPVVHSAPLVHSGPVVHTASLFHATPLVHS 278
           V+STP  H   + H    +H+ P  H +   H+    H     H+TPL HS
Sbjct: 408 VYSTPGPHHHTMGHGHSHIHATPHHHHS---HAATPHHQ----HSTPLAHS 451



 Score = 25.8 bits (54), Expect = 0.46
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 23  GHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAP 76
           GHGH  S      H   SH AT H+     H+ P+   + P     G   H  P
Sbjct: 420 GHGH--SHIHATPHHHHSHAATPHH----QHSTPLAHSSYPAAIQIGHTPHHHP 467


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 115 HVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKGEYSLLQPDGSIRKVEYTADHHN 174
           H+ D  P   E  Y      T  H+   ETR     KG   + +P GS+R    + D+ N
Sbjct: 166 HIRDVGP---EDGYKTYQCRT-KHRLTGETRLS-ATKGRLVITEPVGSVRPKFPSMDNIN 220

Query: 175 GFS 177
           G S
Sbjct: 221 GLS 223


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)

Query: 114 DHVEDHAPAKYEFSYSVEDP 133
           DH  DHAP + E  + V DP
Sbjct: 340 DH-GDHAPKQTEVRFKVHDP 358


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)

Query: 114 DHVEDHAPAKYEFSYSVEDP 133
           DH  DHAP + E  + V DP
Sbjct: 340 DH-GDHAPKQTEVRFKVHDP 358


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.130    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,702
Number of Sequences: 429
Number of extensions: 2869
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 297
length of database: 140,377
effective HSP length: 57
effective length of query: 240
effective length of database: 115,924
effective search space: 27821760
effective search space used: 27821760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)