GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000271-TA|BGIBMGA000271-PA|IPR000618|Insect cuticle
protein
         (228 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       33   0.002
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.49 
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    25   0.65 
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    25   0.65 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   7.9  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   7.9  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   7.9  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 181 YSVEDPHTGDHKSQHETRDGDVVKGEYSLLQ-PDGSFRKVTYTAD 224
           Y VE  +   ++ +  T DG +V GEY ++   DGS R V YTAD
Sbjct: 195 YVVEGRNYRKYRVEERTSDGFIV-GEYGVVSHDDGSLRGVRYTAD 238


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 73  APTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPA 126
           +P+  AAP + ++ +Y      P  HV+     +PT  +A   +SA +   +PA
Sbjct: 173 SPSVTAAPHLRDSPNY----IKPQLHVSTGSTSSPTIASATYTNSANSSIWSPA 222


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 80  PAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPA 126
           P  H+   +Q +  + T   APA + + +   +   HS+++  T+PA
Sbjct: 12  PKYHQQFHHQQLFQSATTE-APAAYSSSSPSGSSPQHSSSSASTSPA 57


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 80  PAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPA 126
           P  H+   +Q +  + T   APA + + +   +   HS+++  T+PA
Sbjct: 12  PKYHQQFHHQQLFQSATTE-APAAYSSSSPSGSSPQHSSSSASTSPA 57


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 167 HYVDEYAHPKYGYSYSVEDPHTGDHKSQHE---TRDGDVVKGEYSL 209
           HY + +    YGY+ S E P +      H     +D  ++  E  L
Sbjct: 38  HYSNYHYEDPYGYTGSEETPPSPQEVYYHHQTIPQDNPIINTETGL 83


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 167 HYVDEYAHPKYGYSYSVEDPHTGDHKSQHE---TRDGDVVKGEYSL 209
           HY + +    YGY+ S E P +      H     +D  ++  E  L
Sbjct: 38  HYSNYHYEDPYGYTGSEETPPSPQEVYYHHQTIPQDNPIINTETGL 83


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 167 HYVDEYAHPKYGYSYSVEDPHTGDHKSQHE---TRDGDVVKGEYSL 209
           HY + +    YGY+ S E P +      H     +D  ++  E  L
Sbjct: 38  HYSNYHYEDPYGYTGSEETPPSPQEVYYHHQTIPQDNPIINTETGL 83


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.127    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,009
Number of Sequences: 317
Number of extensions: 2044
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 7
length of query: 228
length of database: 114,650
effective HSP length: 55
effective length of query: 173
effective length of database: 97,215
effective search space: 16818195
effective search space used: 16818195
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)