GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000271-TA|BGIBMGA000271-PA|IPR000618|Insect cuticle
protein
         (228 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    33   0.035
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.3  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 33.1 bits (72), Expect = 0.035
 Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 74  PTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSAI 133
           P   AAP V EA S   +H  P   VAP    AP   AAP    A +    PA+      
Sbjct: 515 PQPPAAPVVPEAPS---VHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEA 571

Query: 134 HQVP 137
             VP
Sbjct: 572 LSVP 575



 Score = 32.7 bits (71), Expect = 0.046
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 80  PAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSAIHQVP 137
           P+V +  +   +  AP+ H  PA   AP   +AP   +A     AP++    A+  VP
Sbjct: 512 PSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVP 569



 Score = 31.1 bits (67), Expect = 0.14
 Identities = 19/69 (27%), Positives = 26/69 (37%)

Query: 70  IQEAPTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHA 129
           +   P   A P V EA S     +AP     P+  + P     P A S      AP +  
Sbjct: 616 VPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 675

Query: 130 TSAIHQVPA 138
             ++ Q PA
Sbjct: 676 VPSVPQPPA 684



 Score = 30.3 bits (65), Expect = 0.25
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 70  IQEAPTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHA 129
           I  A    A P+V   S  Q   +AP    AP+ H+ P    AP   SA     AP +  
Sbjct: 497 ISSASQKAAQPSVITPSVPQP-PAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPE 555

Query: 130 TSAIHQVPA 138
             ++ Q PA
Sbjct: 556 APSVPQRPA 564



 Score = 29.9 bits (64), Expect = 0.32
 Identities = 17/68 (25%), Positives = 22/68 (32%)

Query: 70  IQEAPTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHA 129
           + EAP+ H  PA   A    +    P   V P     P   A P    A +    P    
Sbjct: 523 VPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPV 582

Query: 130 TSAIHQVP 137
              +  VP
Sbjct: 583 APEVPSVP 590



 Score = 28.7 bits (61), Expect = 0.75
 Identities = 19/69 (27%), Positives = 25/69 (36%)

Query: 70  IQEAPTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHA 129
           +   P    AP V EA S      AP     P+  + P     P A S      AP +  
Sbjct: 586 VPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645

Query: 130 TSAIHQVPA 138
             ++ Q PA
Sbjct: 646 VPSVPQRPA 654



 Score = 28.3 bits (60), Expect = 0.99
 Identities = 19/68 (27%), Positives = 26/68 (38%)

Query: 70  IQEAPTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHA 129
           +  AP   AAP V EA S     + P    A +  + P    AP   S      AP +  
Sbjct: 541 VPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPE 600

Query: 130 TSAIHQVP 137
             ++ Q P
Sbjct: 601 APSVPQPP 608



 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/68 (23%), Positives = 22/68 (32%)

Query: 70  IQEAPTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHA 129
           + EAP+    P    A    ++   P   V P     P   AAP      +    PA+  
Sbjct: 598 VPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPV 657

Query: 130 TSAIHQVP 137
                 VP
Sbjct: 658 VPEAPSVP 665



 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/68 (25%), Positives = 23/68 (33%)

Query: 70  IQEAPTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHA 129
           + EAP+    PAV       ++   P   VAP     P    AP    A +    P    
Sbjct: 553 VPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPV 612

Query: 130 TSAIHQVP 137
              +  VP
Sbjct: 613 APEVPSVP 620



 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/61 (22%), Positives = 21/61 (34%)

Query: 67  IHTIQEAPTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPA 126
           +  + EAP+    PA        ++   P   V P     P   AAP      +    PA
Sbjct: 625 VPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPA 684

Query: 127 I 127
           +
Sbjct: 685 V 685



 Score = 25.8 bits (54), Expect = 5.3
 Identities = 19/65 (29%), Positives = 23/65 (35%)

Query: 74  PTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSAI 133
           P   A P V EA S      AP     P+  + P     P A S      AP      ++
Sbjct: 560 PQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSV 619

Query: 134 HQVPA 138
            Q PA
Sbjct: 620 PQRPA 624



 Score = 25.4 bits (53), Expect = 7.0
 Identities = 17/65 (26%), Positives = 22/65 (33%)

Query: 74  PTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSAI 133
           P    AP   E  S      AP    AP+  + P    AP   S       P +    ++
Sbjct: 575 PQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSV 634

Query: 134 HQVPA 138
            Q PA
Sbjct: 635 PQPPA 639



 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/65 (23%), Positives = 24/65 (36%)

Query: 73  APTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSA 132
           AP     P+V +  +   +  AP+    PA    P   + P   +      AP++    A
Sbjct: 610 APVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPA 669

Query: 133 IHQVP 137
              VP
Sbjct: 670 APVVP 674


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 74   PTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSAI 133
            PT   AP+ H     Q +  AP + VAP   +AP       A S+     AP      A+
Sbjct: 1433 PTNPGAPSNHAP---QVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAV 1489

Query: 134  HQVP 137
              VP
Sbjct: 1490 PNVP 1493


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.127    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,008,384
Number of Sequences: 5004
Number of extensions: 37062
Number of successful extensions: 108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 29
length of query: 228
length of database: 2,362,478
effective HSP length: 70
effective length of query: 158
effective length of database: 2,012,198
effective search space: 317927284
effective search space used: 317927284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)