GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000271-TA|BGIBMGA000271-PA|IPR000618|Insect cuticle
protein
         (228 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        29   0.036
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.77 
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   3.1  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 29.1 bits (62), Expect = 0.036
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 69  TIQEAPTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIH 128
           TIQ   T  A  ++  + S  A+ +A   +     H +P+   +   HS ++  T+PA  
Sbjct: 26  TIQACTTSPATASLESSLSAAAVAAAAVNYAQQ--HNSPSPTGSSPQHSGSSASTSPAAR 83

Query: 129 ATSAIH 134
            TS+++
Sbjct: 84  TTSSMY 89



 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 78  AAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSAIH 134
           AA     A +Y   H++P+   +   H   +   +PAA   TT    P + A +A H
Sbjct: 45  AAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAAR--TTSSMYPYVSAAAAHH 99


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 91  IHSAPTYHVAPAGHEAPTYHAAP---AAHSATTY--HTAPAIHAT 130
           ++S P  H    GH     HA P    +H+AT +  H+ P  H++
Sbjct: 408 VYSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAHSS 452


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 202 VVKGEYSLLQPDGSFRKVTYTADHH 226
           V +G  S   PDG    +TY AD +
Sbjct: 70  VSQGSDSYTAPDGQQVSITYVADEN 94


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.127    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,574
Number of Sequences: 429
Number of extensions: 2240
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 228
length of database: 140,377
effective HSP length: 56
effective length of query: 172
effective length of database: 116,353
effective search space: 20012716
effective search space used: 20012716
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)