Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000270-TA|BGIBMGA000270-PA|IPR000618|Insect cuticle
protein
         (283 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       29   0.039
AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine 3-mon...    25   0.84 
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    25   0.84 
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    25   0.84 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    24   1.5  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   1.9  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    23   3.4  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   5.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.9  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 29.1 bits (62), Expect = 0.039
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 61  YSVSDKKTGDHKTHRESRDGDRVRGEYSLVE-PDGSLRKVEYDAD 104
           Y V  +    ++    + DG  V GEY +V   DGSLR V Y AD
Sbjct: 195 YVVEGRNYRKYRVEERTSDGFIV-GEYGVVSHDDGSLRGVRYTAD 238


>AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 290

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/23 (39%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 31  DGAWKTIKTYHPPSPIYKY-ETY 52
           DGA+ T++ Y   +P+++Y +TY
Sbjct: 167 DGAYSTLRRYMQLTPLFEYSQTY 189


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/23 (39%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 31  DGAWKTIKTYHPPSPIYKY-ETY 52
           DGA+ T++ Y   +P+++Y +TY
Sbjct: 167 DGAYSTLRRYMQLTPLFEYSQTY 189


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/23 (39%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 31  DGAWKTIKTYHPPSPIYKY-ETY 52
           DGA+ T++ Y   +P+++Y +TY
Sbjct: 167 DGAYSTLRRYMQLTPLFEYSQTY 189


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 136 PIGHGIKINHYFPEKNTAKDVSFDNTD 162
           P+GH + +NH + + +  +  S D+ D
Sbjct: 265 PLGHTLSMNHKYEKIDKEEHESMDDDD 291


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 40  YHPPSPIYKYETYRYPKY 57
           Y PP P+Y +   RY  Y
Sbjct: 162 YPPPPPVYTHHYARYHPY 179


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/36 (25%), Positives = 22/36 (61%)

Query: 201 ENVGKSNAERLIQKDLVAVVDSTTPLIIENEKSLEG 236
           +N+ K  AE++++ DL+ ++       ++++ S EG
Sbjct: 208 DNMQKREAEKIVRPDLIHLLMEARKGKLKHDNSNEG 243


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)

Query: 9   IC-FVGGIKTVFVDPNEGPYAGEDGAW 34
           IC F G    VF D  + PY  +D  W
Sbjct: 299 ICEFTGDWTRVFDDQQKVPYKYKDDQW 325


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 85  GEYSLVEPDGSLRKVEYDADDHNGFSA 111
           G Y    P+G + + +      NG+SA
Sbjct: 142 GSYDPYSPNGKIGREDLSPSSLNGYSA 168


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,809
Number of Sequences: 317
Number of extensions: 3400
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 9
length of query: 283
length of database: 114,650
effective HSP length: 56
effective length of query: 227
effective length of database: 96,898
effective search space: 21995846
effective search space used: 21995846
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 43 (21.4 bits)