Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000269-TA|BGIBMGA000269-PA|IPR000618|Insect cuticle
protein
         (232 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    29   0.76 
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    27   3.1  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   4.1  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    26   4.1  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    26   5.4  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   5.4  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.1  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 22/67 (32%), Positives = 29/67 (43%)

Query: 107 AVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGD 166
           AVATP    A  AP     AP   S  SA +AK+ +    +     Y     +  G SGD
Sbjct: 340 AVATPQKVEAPSAPRLQKRAPRQQSNDSAVLAKLQSICNPKNPTLLYRNFVKIGQGASGD 399

Query: 167 NKSQQEV 173
             S ++V
Sbjct: 400 VYSARQV 406


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 158 SVADGHSGDNKSQQEVRDGDAVKGSYSFHEADGSIRTVEYTADAHNGFNAVVHNTAPTAA 217
           S+AD H  D  + Q   D ++   SY    A  S   V+   D+ N F+ +  +  P + 
Sbjct: 162 SIADSHFPDPNAMQRPHDLESQPFSYPKIHASNSFNFVKRDIDSSN-FSNLDASALPISP 220

Query: 218 PTHIKAV 224
           P+   +V
Sbjct: 221 PSDFFSV 227


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 105 KLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAK----IVAHQAEEIAYPKYEYNYS 158
           K A ++  T    P P   ++AP+A   HS P         +++A ++ +P  E ++S
Sbjct: 119 KRATSSQETKRDRPLPNIRNSAPSATRSHSTPCVAPGYLRTSNEAADVVFPHEEAHFS 176


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 94  PQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAH 143
           PQT   ++P+  +A +TPV+  + P P T    P  ++   AP+    AH
Sbjct: 222 PQTTQDSSPILTMAPSTPVSVGSTP-PSTPSVLP--IAKQLAPMNVCKAH 268


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 79  SAESVSSQNIIRHDQPQTIN-YAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPV 137
           S++  +  +++  D    +N YA PV   ++  P  YH + +P T+       S   +P 
Sbjct: 68  SSKQDTGSSVLDPDGDAYVNRYARPVTAGSIYIPSNYHKSFSPNTFSGFNVKRSASKSPK 127

Query: 138 AKIVAHQAEEIA 149
                  +E+I+
Sbjct: 128 RSANGSTSEDIS 139


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 163 HSGDNKSQQEVRDGDAVKGSYSFHEADGSIRTVEYTADAHNGF 205
           H   N ++Q V + +           DG    +  T D HNGF
Sbjct: 17  HVSQNIAKQVVNNENVFMKLVMTRMLDGKTEVIPLTTDVHNGF 59


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 153 YEYNYSV---ADGHSGDNKSQQEVRDGDAVKGSYS 184
           +++N+S    +DGHS D   QQ +   D+V   +S
Sbjct: 104 FDFNFSCYFGSDGHSNDTLCQQYIDVADSVGEQFS 138


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.124    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 880,875
Number of Sequences: 5004
Number of extensions: 31525
Number of successful extensions: 45
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 7
length of query: 232
length of database: 2,362,478
effective HSP length: 71
effective length of query: 161
effective length of database: 2,007,194
effective search space: 323158234
effective search space used: 323158234
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 52 (25.0 bits)