Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000269-TA|BGIBMGA000269-PA|IPR000618|Insect cuticle
protein
(232 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 32 0.38
At4g25900.1 68417.m03724 aldose 1-epimerase family protein simil... 30 1.5
At3g12410.1 68416.m01546 hypothetical protein 29 2.0
At3g54590.1 68416.m06040 proline-rich extensin-like family prote... 29 2.7
At1g69890.1 68414.m08043 expressed protein contains Pfam profil... 29 3.5
At1g33680.1 68414.m04166 KH domain-containing protein similar to... 29 3.5
At5g61210.1 68418.m07678 SNAP25 homologous protein SNAP33 (SNAP3... 28 4.7
At3g12440.1 68416.m01549 extensin family protein contains simila... 28 4.7
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 28 4.7
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 28 4.7
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family... 27 8.1
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family... 27 8.1
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 27 8.1
At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domai... 27 8.1
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 100 AAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAP 136
+AP + PV +H+ P P+ +H+ P V + S P
Sbjct: 697 SAPCEESPPPAPVVHHSPPPPMVHHSPPPPVIHQSPP 733
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 101 APVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIV 141
APV + P+ +H+ P PV + + P + P+ ++
Sbjct: 707 APVVHHSPPPPMVHHSPPPPVIHQSPPPPSPEYEGPLPPVI 747
>At4g25900.1 68417.m03724 aldose 1-epimerase family protein similar
to apospory-associated protein C; APOC [Chlamydomonas
reinhardtii] GI:6970044 Pfam profile PF01263: Aldose
1-epimerase
Length = 318
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 127 PAAVSYHSAPVAKIVAHQAEEIA-YP-KYEYNYSVADGHSGDNKSQQEVRDGDAVKGSYS 184
P S +A V IV E++ +P K+EY VA GH GD V++ D +++
Sbjct: 123 PPLPSLSTAHVDLIVRSSNEDLKIWPHKFEYRLRVALGHDGDLTLTSRVKNTDTKPFNFT 182
Query: 185 F 185
F
Sbjct: 183 F 183
>At3g12410.1 68416.m01546 hypothetical protein
Length = 230
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 110 TPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIV 141
TP +Y++ P P Y+A P + Y+S A I+
Sbjct: 65 TPFSYYSDPRPNNYYADPPPIRYYSDNPADIL 96
>At3g54590.1 68416.m06040 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 743
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 85 SQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAP 136
S ++ P Y +P +P Y+ +P P +Y++ V Y S P
Sbjct: 680 SPKVVYKSPPPPYVYNSPPPPYYSPSPKVYYKSPPPPSYYSPSPKVEYKSPP 731
>At1g69890.1 68414.m08043 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 279
Score = 28.7 bits (61), Expect = 3.5
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 86 QNIIRHDQPQTIN---YAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVA 142
+N + HD ++ + V ++ V T T APAPVT SY +PV++ +
Sbjct: 123 RNSVTHDTSHVLDSFLWDVDVVEILVGT-TTPAPAPAPVTTPPPHRRPSYTYSPVSRTSS 181
Query: 143 HQAEE---IAYPKYE---YNYSVAD--GH 163
++EE + PK E Y +AD GH
Sbjct: 182 EKSEEELTVPPPKSEGRPIYYHIADEEGH 210
>At1g33680.1 68414.m04166 KH domain-containing protein similar to
FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
sapiens]
Length = 759
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 113 TYHAAPAPVTYHAAPAAVSYHSAPVA 138
+Y + PA +Y + PAA SY S P A
Sbjct: 582 SYGSTPAAASYGSTPAAPSYGSTPAA 607
>At5g61210.1 68418.m07678 SNAP25 homologous protein SNAP33 (SNAP33)
(SNAP33B) / synaptosomal-associated protein SNAP25-like
1 / snap25a identical to SNAP25 homologous protein
SNAP33 (AtSNAP33) (Synaptosomal-associated protein
SNAP25-like 1) (SNAP-25 like protein 1) (Snap25a)
(Swiss-Prot:Q9S7P9) [Arabidopsis thaliana]
Length = 300
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/73 (23%), Positives = 28/73 (38%)
Query: 152 KYEYNYSVADGHSGDNKSQQEVRDGDAVKGSYSFHEADGSIRTVEYTADAHNGFNAVVHN 211
KY+Y + D +N+S QE+ K + G ++ E ++H+
Sbjct: 80 KYQYKNNFRDSGGIENQSVQELEGYAVYKAEETTKSVQGCLKVAEDIRSDATRTLVMLHD 139
Query: 212 TAPTAAPTHIKAV 224
TH KAV
Sbjct: 140 QGEQITRTHHKAV 152
>At3g12440.1 68416.m01549 extensin family protein contains
similarity to Swiss-Prot:Q38913 extensin 1 precursor
(AtExt1) (AtExt4) [Arabidopsis thaliana]
Length = 353
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 110 TPVTYHAAPAPVTYHAAPAAVSYHS 134
+PV+YH+ +PVT+H V Y S
Sbjct: 73 SPVSYHSDSSPVTHHYDSPPVCYRS 97
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 89 IRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAK 139
++H P + + P + P Y + P PV Y++ P PV K
Sbjct: 50 VKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPPVYK 100
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 89 IRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAK 139
++H P + + P + P Y + P PV Y++ P PV K
Sbjct: 50 VKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPPVYK 100
>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
protein
Length = 438
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 93 QPQTINYAAPVAKLAVA-TPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYP 151
QPQ Y P + TP + P A PA + P A A+ ++P
Sbjct: 174 QPQQHQYYMPPPPTQLQNTPAPVPVSTPPSQLQAPPAQSQFMPPPPAPSHPSSAQTQSFP 233
Query: 152 KYEYNY 157
+Y+ N+
Sbjct: 234 QYQQNW 239
>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
protein
Length = 496
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 93 QPQTINYAAPVAKLAVA-TPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYP 151
QPQ Y P + TP + P A PA + P A A+ ++P
Sbjct: 232 QPQQHQYYMPPPPTQLQNTPAPVPVSTPPSQLQAPPAQSQFMPPPPAPSHPSSAQTQSFP 291
Query: 152 KYEYNY 157
+Y+ N+
Sbjct: 292 QYQQNW 297
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 134 SAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGDNKSQQEVRDGDAVKGSYSFHEADGS 191
S V ++ H+ YP + V D ++G +K VR GD + S + E +G+
Sbjct: 210 SPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGA 267
>At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 624
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 131 SYHSAPVAKIVAHQAEEIAYPKYEYNYS 158
SY +AP +V+H A +IA+ + Y YS
Sbjct: 78 SYTTAPARNVVSHHA-QIAWRRLHYKYS 104
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.124 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,412,282
Number of Sequences: 28952
Number of extensions: 157498
Number of successful extensions: 499
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 43
length of query: 232
length of database: 12,070,560
effective HSP length: 79
effective length of query: 153
effective length of database: 9,783,352
effective search space: 1496852856
effective search space used: 1496852856
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)
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