GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000269-TA|BGIBMGA000269-PA|IPR000618|Insect cuticle
protein
         (232 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.50 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    24   1.2  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   3.5  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   6.2  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 146 EEIAYPKYEYNYSVADGHSGDN--KSQQEVRDGDA-VKGSYSF--HEADGSIRTVEYTAD 200
           EE++  K + N  V     G N  K + E R  D  + G Y    H+ DGS+R V YTAD
Sbjct: 181 EEVS-KKIDDNQKVGYVVEGRNYRKYRVEERTSDGFIVGEYGVVSHD-DGSLRGVRYTAD 238


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 90  RHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIA 149
           +H+Q Q++  ++ +   +   P+    +P PV+ +   +  S  S+P      H  +   
Sbjct: 130 QHNQQQSVEKSSKLKNKSA--PILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSPN 187

Query: 150 YPKYEYNYSVADGHS 164
           Y K + + S     S
Sbjct: 188 YIKPQLHVSTGSTSS 202


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 176 GDAVKGSYSFHEADGSIRTVEYTADAHNGFNAVVHNTAPTAAPTHIKA 223
           GD  KG+++  EA   I     T  +  G+NA     AP AA   ++A
Sbjct: 76  GDIEKGNFAEVEALKEINPNLKTIISIGGWNAGNAILAPIAASPELRA 123


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 205 FNAVVHNTAPTAAPTHIKAVPALQYYHH 232
           F A + + A T+ P H    P + Y HH
Sbjct: 146 FAASIFHAAATSLPLHYPPPPPV-YTHH 172


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.124    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,775
Number of Sequences: 317
Number of extensions: 1720
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 232
length of database: 114,650
effective HSP length: 55
effective length of query: 177
effective length of database: 97,215
effective search space: 17207055
effective search space used: 17207055
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)