Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000268-TA|BGIBMGA000268-PA|IPR000618|Insect cuticle
protein
         (166 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.25 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   2.3  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   4.0  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   5.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.0  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 25.4 bits (53), Expect = 0.25
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)

Query: 104 QQEVRDGDVVKGSYSF--HEADGSIRTVEYTAD 134
           ++   DG +V G Y    H+ DGS+R V YTAD
Sbjct: 208 EERTSDGFIV-GEYGVVSHD-DGSLRGVRYTAD 238


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 116 SYSFHEADGSIRTVEYTADDHNGFNAVVHNTAPTSAPTL 154
           SY F++ +  +    Y  D H GF+ V + T     P L
Sbjct: 431 SYDFYKMNHPV----YHKDPHYGFHNVTNTTLQNLTPQL 465


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 114 KGSYSFHEADGSIRTVEYTADDHNG 138
           K SY+  +  G I  V+ T DD  G
Sbjct: 390 KASYARAKGLGGIAIVDITLDDFRG 414


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 110 GDVVKGSYSFHEADGSIRTVEYTADDHNGFNAVVHNTAPTSAPTLIKA 157
           GD+ KG+++  EA   I     T     G+NA     AP +A   ++A
Sbjct: 76  GDIEKGNFAEVEALKEINPNLKTIISIGGWNAGNAILAPIAASPELRA 123


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 115 GSYSFHEADGSIRTVEYTADDHNGFNAVVHNTAPTSAPT 153
           GSY  +  +G I   + +    NG++A   ++     PT
Sbjct: 142 GSYDPYSPNGKIGREDLSPSSLNGYSADSCDSKKKKGPT 180


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.129    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,888
Number of Sequences: 317
Number of extensions: 1077
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 166
length of database: 114,650
effective HSP length: 52
effective length of query: 114
effective length of database: 98,166
effective search space: 11190924
effective search space used: 11190924
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)