Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000268-TA|BGIBMGA000268-PA|IPR000618|Insect cuticle
protein
         (166 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   2.5  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   3.3  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    26   3.3  
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    25   5.8  

>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 97  HSGDNKSQQEVRDGDVVKGSYSFHEADGSIRTVEYTADDHNGF 139
           H   N ++Q V + +V          DG    +  T D HNGF
Sbjct: 17  HVSQNIAKQVVNNENVFMKLVMTRMLDGKTEVIPLTTDVHNGF 59


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 92  SVADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSIRTVEYTADDHNGFNAVVHNTAPTSA 151
           S+AD H  D  + Q   D +    SY    A  S   V+   D  N F+ +  +  P S 
Sbjct: 162 SIADSHFPDPNAMQRPHDLESQPFSYPKIHASNSFNFVKRDIDSSN-FSNLDASALPISP 220

Query: 152 PT 153
           P+
Sbjct: 221 PS 222


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 70  IAKVLAHREDQEIAYPKYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSI 126
           I K   +   +   YPK   N ++   HS  N+   E ++  +    YSF   D S+
Sbjct: 143 IEKFPQYNPQEGYTYPKLS-NDNLEVDHSNTNEPADENKNQSIENADYSFSPEDFSV 198


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 118 SFHEADGSIRTVEYTADDHNGFNAVVHNTAPTSA 151
           S H ADG  R +     D  G    V N+ P+ A
Sbjct: 34  SDHSADGETRPIAIEMKDSKGNTVPVGNSRPSKA 67


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.129    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,327
Number of Sequences: 5004
Number of extensions: 21728
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 4
length of query: 166
length of database: 2,362,478
effective HSP length: 68
effective length of query: 98
effective length of database: 2,022,206
effective search space: 198176188
effective search space used: 198176188
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)