Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000268-TA|BGIBMGA000268-PA|IPR000618|Insect cuticle
protein
         (166 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ...    29   2.2  
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei...    29   2.2  

>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 78  EDQEIAYPKYEYNYSVA-DGHSGDNKSQQEVRDGDVVKGSYSFHEADG-SIRTVE-YTAD 134
           ++  +  P  +Y   VA D   G    Q + RD D  + +YSF + +G S + +  ++ D
Sbjct: 742 DESAVFLPTSQYTAFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSID 801

Query: 135 DHNGFNAVVHNTA 147
           +H G   + H  +
Sbjct: 802 EHTGLVKLRHGVS 814


>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 78  EDQEIAYPKYEYNYSVA-DGHSGDNKSQQEVRDGDVVKGSYSFHEADG-SIRTVE-YTAD 134
           ++  +  P  +Y   VA D   G    Q + RD D  + +YSF + +G S + +  ++ D
Sbjct: 742 DESAVFLPTSQYTAFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSID 801

Query: 135 DHNGFNAVVHNTA 147
           +H G   + H  +
Sbjct: 802 EHTGLVKLRHGVS 814


>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 78  EDQEIAYPKYEYNYSVA-DGHSGDNKSQQEVRDGDVVKGSYSFHEADG-SIRTVE-YTAD 134
           ++  +  P  +Y   VA D   G    Q + RD D  + +YSF + +G S + +  ++ D
Sbjct: 742 DESAVFLPTSQYTAFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSID 801

Query: 135 DHNGFNAVVHNTA 147
           +H G   + H  +
Sbjct: 802 EHTGLVKLRHGVS 814


>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
           protein.
          Length = 2920

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 78  EDQEIAYPKYEYNYSVA-DGHSGDNKSQQEVRDGDVVKGSYSFHEADG-SIRTVE-YTAD 134
           ++  +  P  +Y   VA D   G    Q + RD D  + +YSF + +G S + +  ++ D
Sbjct: 742 DESAVFLPTSQYTAFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSID 801

Query: 135 DHNGFNAVVHNTA 147
           +H G   + H  +
Sbjct: 802 EHTGLVKLRHGVS 814


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.129    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,521,399
Number of Sequences: 27539
Number of extensions: 122229
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 4
length of query: 166
length of database: 12,573,161
effective HSP length: 76
effective length of query: 90
effective length of database: 10,480,197
effective search space: 943217730
effective search space used: 943217730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)