Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000268-TA|BGIBMGA000268-PA|IPR000618|Insect cuticle
protein
         (166 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    31   0.008
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   3.6  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.3  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 30.7 bits (66), Expect = 0.008
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 87  YEYNYSVADGHSGDNKSQQEVRDGD---VVKGSYSFHEADGSIRTVEYTADDHNGFNAVV 143
           Y  N+  ++G S     Q +  D +   V +GS S+   DG   ++ Y AD+ NGF  V 
Sbjct: 42  YINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPDGQQVSITYVADE-NGFQ-VQ 99

Query: 144 HNTAPTSAPTLIKAVPALQY 163
            +  PT+ P   +   AL++
Sbjct: 100 GSHIPTAPPIPPEIQRALEW 119


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
          protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 4  KIVVLCGLVAVSQAGLLAAPV--HYSPAESVSSQ 35
          KI  + GL+ ++   ++AAPV   + P E   ++
Sbjct: 2  KIYFIVGLLFMAMVAIMAAPVEDEFEPLEHFENE 35


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
          precursor protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 4  KIVVLCGLVAVSQAGLLAAPV--HYSPAESVSSQ 35
          KI  + GL+ ++   ++AAPV   + P E   ++
Sbjct: 2  KIYFIVGLLFMAMVAIMAAPVEDEFEPLEHFENE 35


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 14/51 (27%), Positives = 20/51 (39%)

Query: 114 KGSYSFHEADGSIRTVEYTADDHNGFNAVVHNTAPTSAPTLIKAVPALQYY 164
           KG     E  GS+R    + D+ NG +       P   P     VP  ++Y
Sbjct: 197 KGRLVITEPVGSVRPKFPSMDNINGLSTESKADLPLLCPAQGFPVPVHRWY 247



 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 129  VEYTADDHNGFNAVVHNTAPTSAPTLIKAVPALQYY 164
            VE+   +   +N V +N  P     ++  VPA  Y+
Sbjct: 1496 VEHKKKNQQEWNQVSNNVKPGGNFVVLDLVPATWYH 1531


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.129    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,687
Number of Sequences: 429
Number of extensions: 1390
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 166
length of database: 140,377
effective HSP length: 53
effective length of query: 113
effective length of database: 117,640
effective search space: 13293320
effective search space used: 13293320
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)