GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000268-TA|BGIBMGA000268-PA|IPR000618|Insect cuticle
protein
         (166 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.21 
SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5)                   30   1.1  
SB_39183| Best HMM Match : LEA_4 (HMM E-Value=2.7)                     28   4.5  
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  

>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 114  KGSYSFHEADGSIRTVEYTADDHNGFNAVVHNTAPTSAPTLIK 156
            KGSY  H+ DG  RT+EY +    G+    H       P + +
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGYLPPAHTRPYPVQPNIYR 1784


>SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5)
          Length = 473

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 1/74 (1%)

Query: 93  VADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSIRTVEYTADDHNGFNAVVHNTAPTSAP 152
           V D   GD     +   GD V+ S SF    G    V Y A    G  A + ++ PT   
Sbjct: 187 VCDSFQGDYARVSDSFQGDYVRVSDSFQSFQGDYARVRYAAAGFFGRQA-IDDSRPTLEE 245

Query: 153 TLIKAVPALQYYHH 166
           + +       Y HH
Sbjct: 246 SRLHEGTKYGYGHH 259


>SB_39183| Best HMM Match : LEA_4 (HMM E-Value=2.7)
          Length = 300

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 72  KVLAHREDQEIAYPKYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSIRTVEY 131
           K+   R+ +E  Y K E    +  G   + +  ++   G + KG ++  +   + R   Y
Sbjct: 111 KIDMQRKTREARYAKDETRDDI-QGTKRETRYARDDTRGKIYKGRHARQDIQETTRETRY 169

Query: 132 TADDHNG 138
           T DD  G
Sbjct: 170 TRDDTRG 176


>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 117 YSFHEADGSIRTVEYTADDH-NGFNAVVHNTAPT-SAPTLI 155
           Y+ ++AD +I + +Y ADD+ N      H+ + T SAP LI
Sbjct: 423 YNDYDADDNIDSDDYDADDNTNNVGGYDHDDSDTNSAPNLI 463


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.129    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,738,676
Number of Sequences: 59808
Number of extensions: 169043
Number of successful extensions: 316
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 5
length of query: 166
length of database: 16,821,457
effective HSP length: 77
effective length of query: 89
effective length of database: 12,216,241
effective search space: 1087245449
effective search space used: 1087245449
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)