Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000267-TA|BGIBMGA000267-PA|IPR000618|Insect cuticle
protein
         (181 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.27 
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   1.1  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   4.5  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   5.9  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   7.8  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)

Query: 119 QQEVRDGDVVKGSYSF--HEADGSIRTVEYTAD 149
           ++   DG +V G Y    H+ DGS+R V YTAD
Sbjct: 208 EERTSDGFIV-GEYGVVSHD-DGSLRGVRYTAD 238


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 125 GDVVKGSYSFHEADGSIRTVEYTADDHSGFNAVVHNTAPTAAPTHIKA 172
           GD+ KG+++  EA   I     T     G+NA     AP AA   ++A
Sbjct: 76  GDIEKGNFAEVEALKEINPNLKTIISIGGWNAGNAILAPIAASPELRA 123


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 154 FNAVVHNTAPTAAPTHIKAVPALQYYHH 181
           F A + + A T+ P H    P + Y HH
Sbjct: 146 FAASIFHAAATSLPLHYPPPPPV-YTHH 172


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 129 KGSYSFHEADGSIRTVEYTADDHSG 153
           K SY+  +  G I  V+ T DD  G
Sbjct: 390 KASYARAKGLGGIAIVDITLDDFRG 414


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 139 GSIRTVEYTADDHSGFNAVVHNTAPTAAPTHIKAVPALQYYHH 181
           G +R V+  AD  S      HN A +  P++        YY +
Sbjct: 3   GFVRQVKQEADSTSPLLTPPHNPAYSPPPSYCDPWYNPYYYQY 45


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,820
Number of Sequences: 317
Number of extensions: 1170
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 181
length of database: 114,650
effective HSP length: 53
effective length of query: 128
effective length of database: 97,849
effective search space: 12524672
effective search space used: 12524672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)