GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000267-TA|BGIBMGA000267-PA|IPR000618|Insect cuticle
protein
         (181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   5.0  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    25   5.0  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    25   6.6  
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    25   8.7  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   8.7  

>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 2   FSKIVVLCALVAVSKAGLLAAPVHYSPAEAVSSQNIVRHD 41
           F +I  + +   +   G   + VH+ P  A+S  N+++ D
Sbjct: 335 FQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKD 374


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 95  EEIAYPKYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSI 141
           E   YPK   N ++   HS  N+   E ++  +    YSF   D S+
Sbjct: 153 EGYTYPKLS-NDNLEVDHSNTNEPADENKNQSIENADYSFSPEDFSV 198


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 11  LVAVSKAGLLAAPVHYSPAEAVSSQNI 37
           L+ + K+ +L  P+H   AEA SS N+
Sbjct: 535 LLQIEKSLVLNKPIHQIGAEASSSNNV 561


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 133 SFHEADGSIRTVEYTADDHSGFNAVVHNTAPTAA 166
           S H ADG  R +     D  G    V N+ P+ A
Sbjct: 34  SDHSADGETRPIAIEMKDSKGNTVPVGNSRPSKA 67


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 107 SVADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSIRTVEYTADDHSGFNAVVHNTAPTAA 166
           S+AD H  D  + Q   D +    SY    A  S   V+   D  S F+ +  +  P + 
Sbjct: 162 SIADSHFPDPNAMQRPHDLESQPFSYPKIHASNSFNFVKRDIDS-SNFSNLDASALPISP 220

Query: 167 PTHIKAV 173
           P+   +V
Sbjct: 221 PSDFFSV 227


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,990
Number of Sequences: 5004
Number of extensions: 22692
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 5
length of query: 181
length of database: 2,362,478
effective HSP length: 69
effective length of query: 112
effective length of database: 2,017,202
effective search space: 225926624
effective search space used: 225926624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)