GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000267-TA|BGIBMGA000267-PA|IPR000618|Insect cuticle
protein
         (181 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1469 - 26742772-26743848                                         30   1.2  
06_03_1282 - 28946363-28946533,28947234-28947272,28947399-289475...    27   6.6  
03_06_0474 - 34184002-34184660,34184755-34184887,34185071-341858...    27   6.6  
11_01_0352 + 2641949-2642974                                           27   8.8  

>07_03_1469 - 26742772-26743848
          Length = 358

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 128 VKGSYSFHEADGSIRTVEYTADDHSGFNAVVHNTAPTAAPTHIKAVPALQYYH 180
           V+   S   A G++R+ ++T D   G  A V   AP AA      +P + YYH
Sbjct: 61  VRADPSPDAATGAVRSFDFTIDAARGLWARVF--APAAAAQAAAPMPVMVYYH 111


>06_03_1282 -
          28946363-28946533,28947234-28947272,28947399-28947566,
          28947605-28947697,28948135-28948215,28948409-28948499,
          28948657-28948728,28948803-28948903,28949283-28949381,
          28949631-28949954
          Length = 412

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 5  IVVLCALV-AVSKAGLLAAPVHYSPAEAVSSQNIVRHDQPQ 44
          IV+L A V AV     L  P HY+P   VSS +      P+
Sbjct: 15 IVILIAFVCAVGIGAYLYTPQHYTPCYLVSSNSCSSRPPPE 55


>03_06_0474 -
           34184002-34184660,34184755-34184887,34185071-34185886,
           34186013-34186104,34186710-34186863
          Length = 617

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 129 KGSYSFHEADGSIRTVEYTADDHSGFNAVVHNTAPTAAP 167
           K SY++    GS  T  Y +  H  FN   H+T P   P
Sbjct: 144 KFSYNWKSLHGSSTTSSYGSPCHPMFNLSKHSTNPKPPP 182


>11_01_0352 + 2641949-2642974
          Length = 341

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 83  SAPVAKIVAHQAEEIAYPKYEYNYSVADGHS----GDNKSQQEVRDGDVVKGSYSFHE-A 137
           SA  A+ +A +  +     Y ++YS ADG+S     D +   +  DGD    + +  E +
Sbjct: 69  SAAAARRIAGEMYKTVNSVY-FDYSAADGYSCFDDDDGRVVDDDDDGDSFSTTTASEEWS 127

Query: 138 DGSIRTVEYTADDHSGFN--AVVHNTAPTAAPTHIKAVPALQYYH 180
           +  IR++  T+ D   F+     ++    AA    K V A   +H
Sbjct: 128 EAVIRSLGRTSTDRFFFDPGPPTNSILAAAAVPETKPVAAAAVFH 172


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,540,478
Number of Sequences: 37544
Number of extensions: 157052
Number of successful extensions: 386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 4
length of query: 181
length of database: 14,793,348
effective HSP length: 78
effective length of query: 103
effective length of database: 11,864,916
effective search space: 1222086348
effective search space used: 1222086348
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)