GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000267-TA|BGIBMGA000267-PA|IPR000618|Insect cuticle
protein
         (181 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    32   0.004
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.3  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 31.9 bits (69), Expect = 0.004
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 87  AKIVAHQAEEIAYPKYEYNYSVADGHSGDNKSQQEVRDGD---VVKGSYSFHEADGSIRT 143
           A I + Q E      Y  N+  ++G S     Q +  D +   V +GS S+   DG   +
Sbjct: 27  AVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPDGQQVS 86

Query: 144 VEYTADDHSGFNAVVHNTAPTAAPTHIKAVPALQY 178
           + Y AD+ +GF  V  +  PTA P   +   AL++
Sbjct: 87  ITYVADE-NGFQ-VQGSHIPTAPPIPPEIQRALEW 119


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 111 GHSGDNKSQQEVRDGDVVKGSYSFHEADGSIRTVEYTADDHSGFNAV 157
           G++   K  Q    G+ V      HE  GS +T+E     HS  + V
Sbjct: 242 GYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVV 288


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 83  SAPVAKIVAHQAEEIAYPKYEYNYSV 108
           +A V + V  +AE+ A   Y+YN+++
Sbjct: 345 NALVLRHVQAEAEKHAAMLYQYNFNI 370


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,147
Number of Sequences: 429
Number of extensions: 1455
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 181
length of database: 140,377
effective HSP length: 54
effective length of query: 127
effective length of database: 117,211
effective search space: 14885797
effective search space used: 14885797
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)