GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000267-TA|BGIBMGA000267-PA|IPR000618|Insect cuticle
protein
         (181 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61210.1 68418.m07678 SNAP25 homologous protein SNAP33 (SNAP3...    33   0.085
At4g25900.1 68417.m03724 aldose 1-epimerase family protein simil...    29   2.4  
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea...    28   3.2  
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa...    28   3.2  
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    28   3.2  
At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domai...    27   5.6  
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa...    27   7.4  
At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II...    27   9.7  

>At5g61210.1 68418.m07678 SNAP25 homologous protein SNAP33 (SNAP33)
           (SNAP33B) / synaptosomal-associated protein SNAP25-like
           1 / snap25a identical to SNAP25 homologous protein
           SNAP33 (AtSNAP33) (Synaptosomal-associated protein
           SNAP25-like 1) (SNAP-25 like protein 1) (Snap25a)
           (Swiss-Prot:Q9S7P9) [Arabidopsis thaliana]
          Length = 300

 Score = 33.5 bits (73), Expect = 0.085
 Identities = 19/73 (26%), Positives = 31/73 (42%)

Query: 101 KYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSIRTVEYTADDHSGFNAVVHN 160
           KY+Y  +  D    +N+S QE+    V K   +     G ++  E    D +    ++H+
Sbjct: 80  KYQYKNNFRDSGGIENQSVQELEGYAVYKAEETTKSVQGCLKVAEDIRSDATRTLVMLHD 139

Query: 161 TAPTAAPTHIKAV 173
                  TH KAV
Sbjct: 140 QGEQITRTHHKAV 152


>At4g25900.1 68417.m03724 aldose 1-epimerase family protein similar
           to apospory-associated protein C; APOC [Chlamydomonas
           reinhardtii] GI:6970044 Pfam profile PF01263: Aldose
           1-epimerase
          Length = 318

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 80  SYHSAPVAKIVAHQAEEIA-YP-KYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSF 134
           S  +A V  IV    E++  +P K+EY   VA GH GD      V++ D    +++F
Sbjct: 127 SLSTAHVDLIVRSSNEDLKIWPHKFEYRLRVALGHDGDLTLTSRVKNTDTKPFNFTF 183


>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
           family protein contains contains Pfam PF00400: WD
           domain, G-beta repeat (7 copies, 3 weak);similar to gene
           PC326 protein - mouse, PIR2:S37694
          Length = 471

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 85  PVAKIVAHQAEEIAYPKYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSIRTV 144
           P++   A QA     P++   Y V D    D++S +E  D D      S  E +G +  V
Sbjct: 387 PLSPGNAKQASGFGNPRWFDGYYVDDDDDSDDESSEESSDDD----DSSEEEENGEV-DV 441

Query: 145 EYTADD 150
           E T DD
Sbjct: 442 EITKDD 447


>At3g51880.2 68416.m05690 high mobility group protein alpha
           (HMGalpha) / HMG protein alpha nearly identical to HMG
           protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
           contains Pfam profile PF00505: HMG (high mobility group)
           box
          Length = 185

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/67 (23%), Positives = 27/67 (40%)

Query: 84  APVAKIVAHQAEEIAYPKYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSIRT 143
           AP  +  A +  E       YN ++ +G     KS+ E+ D D   G  +   ++  +  
Sbjct: 101 APYEEKAAKRKAEYEKQMDAYNKNLEEGSDESEKSRSEINDEDEASGEVTIPLSNEELLE 160

Query: 144 VEYTADD 150
            E   DD
Sbjct: 161 KEAAGDD 167


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 94  AEEIAYPKYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSIRT----VEYTAD 149
           A + A PK  YN   AD  +      +E  DGD    S    E D ++ +     + T D
Sbjct: 403 AVDWAVPKNIYN-GAADATTASADGDKEGSDGDSENSSVDLEEVDEAVESHPPPGDDTDD 461

Query: 150 DHSGFNAVVHNTA 162
           D  G N +  + A
Sbjct: 462 DEDGSNKLTESDA 474


>At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 624

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 80  SYHSAPVAKIVAHQAEEIAYPKYEYNYS 107
           SY +AP   +V+H A +IA+ +  Y YS
Sbjct: 78  SYTTAPARNVVSHHA-QIAWRRLHYKYS 104


>At3g51880.1 68416.m05689 high mobility group protein alpha
           (HMGalpha) / HMG protein alpha nearly identical to HMG
           protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
           contains Pfam profile PF00505: HMG (high mobility group)
           box
          Length = 178

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 84  APVAKIVAHQAEEIAYPKYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSF--HEADGSI 141
           AP  +  A +  E       YN ++ +G     KS+ E+ D D   G       EA G  
Sbjct: 101 APYEEKAAKRKAEYEKQMDAYNKNLEEGSDESEKSRSEINDEDEASGEEELLEKEAAGDD 160

Query: 142 RTVEYTADD 150
              E   DD
Sbjct: 161 EEEEEEEDD 169


>At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 646

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 110 DGHSGDNKSQQEVRDGDVVKGSYSFHE 136
           D   GD+ SQ E  DGD ++ SY   E
Sbjct: 349 DSSDGDSSSQDE-EDGDKIRNSYGLPE 374


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,463,776
Number of Sequences: 28952
Number of extensions: 115236
Number of successful extensions: 261
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 8
length of query: 181
length of database: 12,070,560
effective HSP length: 77
effective length of query: 104
effective length of database: 9,841,256
effective search space: 1023490624
effective search space used: 1023490624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)