Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000266-TA|BGIBMGA000266-PA|IPR000618|Insect cuticle
protein
         (248 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.51 
SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5)                   31   0.68 

>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 196  KGSYSFHEADGSIRTVEYTADDHSGFNAVVH 226
            KGSY  H+ DG  RT+EY +    G+    H
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGYLPPAH 1772


>SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5)
          Length = 473

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 1/74 (1%)

Query: 175 VADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSIRTVEYTADDHSGFNAVVHNTAPTAAP 234
           V D   GD     +   GD V+ S SF    G    V Y A    G  A + ++ PT   
Sbjct: 187 VCDSFQGDYARVSDSFQGDYVRVSDSFQSFQGDYARVRYAAAGFFGRQA-IDDSRPTLEE 245

Query: 235 THIKAVPALQYYHH 248
           + +       Y HH
Sbjct: 246 SRLHEGTKYGYGHH 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.125    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,008,128
Number of Sequences: 59808
Number of extensions: 184487
Number of successful extensions: 280
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 2
length of query: 248
length of database: 16,821,457
effective HSP length: 80
effective length of query: 168
effective length of database: 12,036,817
effective search space: 2022185256
effective search space used: 2022185256
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)