GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000266-TA|BGIBMGA000266-PA|IPR000618|Insect cuticle
protein
         (248 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.41 
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   1.7  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   6.7  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   8.9  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)

Query: 186 QQEVRDGDVVKGSYSF--HEADGSIRTVEYTAD 216
           ++   DG +V G Y    H+ DGS+R V YTAD
Sbjct: 208 EERTSDGFIV-GEYGVVSHD-DGSLRGVRYTAD 238


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 192 GDVVKGSYSFHEADGSIRTVEYTADDHSGFNAVVHNTAPTAAPTHIKA 239
           GD+ KG+++  EA   I     T     G+NA     AP AA   ++A
Sbjct: 76  GDIEKGNFAEVEALKEINPNLKTIISIGGWNAGNAILAPIAASPELRA 123


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 221 FNAVVHNTAPTAAPTHIKAVPALQYYHH 248
           F A + + A T+ P H    P + Y HH
Sbjct: 146 FAASIFHAAATSLPLHYPPPPPV-YTHH 172


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 196 KGSYSFHEADGSIRTVEYTADDHSG 220
           K SY+  +  G I  V+ T DD  G
Sbjct: 390 KASYARAKGLGGIAIVDITLDDFRG 414


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.125    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,570
Number of Sequences: 317
Number of extensions: 1233
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 248
length of database: 114,650
effective HSP length: 55
effective length of query: 193
effective length of database: 97,215
effective search space: 18762495
effective search space used: 18762495
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)