GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000266-TA|BGIBMGA000266-PA|IPR000618|Insect cuticle
protein
         (248 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ...    28   7.2  
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei...    28   7.2  

>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 167 PKYEYNYSVA-DGHSGDNKSQQEVRDGDVVKGSYSFHEADG-SIRTVE-YTADDHSGFNA 223
           P  +Y   VA D   G    Q + RD D  + +YSF + +G S + +  ++ D+H+G   
Sbjct: 749 PTSQYTAFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVK 808

Query: 224 VVHNTA 229
           + H  +
Sbjct: 809 LRHGVS 814


>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 167 PKYEYNYSVA-DGHSGDNKSQQEVRDGDVVKGSYSFHEADG-SIRTVE-YTADDHSGFNA 223
           P  +Y   VA D   G    Q + RD D  + +YSF + +G S + +  ++ D+H+G   
Sbjct: 749 PTSQYTAFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVK 808

Query: 224 VVHNTA 229
           + H  +
Sbjct: 809 LRHGVS 814


>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 167 PKYEYNYSVA-DGHSGDNKSQQEVRDGDVVKGSYSFHEADG-SIRTVE-YTADDHSGFNA 223
           P  +Y   VA D   G    Q + RD D  + +YSF + +G S + +  ++ D+H+G   
Sbjct: 749 PTSQYTAFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVK 808

Query: 224 VVHNTA 229
           + H  +
Sbjct: 809 LRHGVS 814


>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
           protein.
          Length = 2920

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 167 PKYEYNYSVA-DGHSGDNKSQQEVRDGDVVKGSYSFHEADG-SIRTVE-YTADDHSGFNA 223
           P  +Y   VA D   G    Q + RD D  + +YSF + +G S + +  ++ D+H+G   
Sbjct: 749 PTSQYTAFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVK 808

Query: 224 VVHNTA 229
           + H  +
Sbjct: 809 LRHGVS 814


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.125    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,401,891
Number of Sequences: 27539
Number of extensions: 135543
Number of successful extensions: 199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 4
length of query: 248
length of database: 12,573,161
effective HSP length: 80
effective length of query: 168
effective length of database: 10,370,041
effective search space: 1742166888
effective search space used: 1742166888
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)