GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000265-TA|BGIBMGA000265-PA|IPR000618|Insect cuticle
protein
         (248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    25   7.8  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   7.8  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    25   7.8  

>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 200 SFHEADGSIRTVEYTADDHSGFNAVVHNTAPTAAPTHIKAL 240
           S H ADG  R +     D  G    V N+ P+ A   +  L
Sbjct: 34  SDHSADGETRPIAIEMKDSKGNTVPVGNSRPSKASNWLAGL 74


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 2   FSKIVVLCALVAVSKAGLLAAPVHYSPAEAVSSQSIVRHDQPQLH 46
           F +I  + +   +   G   + VH+ P  A+S  ++++ D   L+
Sbjct: 335 FQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLY 379


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 162 EEIAYPKYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSI 208
           E   YPK   N ++   HS  N+   E ++  +    YSF   D S+
Sbjct: 153 EGYTYPKLS-NDNLEVDHSNTNEPADENKNQSIENADYSFSPEDFSV 198


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.126    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 807,203
Number of Sequences: 5004
Number of extensions: 24249
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 3
length of query: 248
length of database: 2,362,478
effective HSP length: 71
effective length of query: 177
effective length of database: 2,007,194
effective search space: 355273338
effective search space used: 355273338
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)