GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000265-TA|BGIBMGA000265-PA|IPR000618|Insect cuticle
protein
         (248 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1469 - 26742772-26743848                                         30   1.5  
06_03_1282 - 28946363-28946533,28947234-28947272,28947399-289475...    29   4.7  

>07_03_1469 - 26742772-26743848
          Length = 358

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 195 VKGSYSFHEADGSIRTVEYTADDHSGFNAVVHNTAPTAAPTHIKALPALQYYH 247
           V+   S   A G++R+ ++T D   G  A V   AP AA      +P + YYH
Sbjct: 61  VRADPSPDAATGAVRSFDFTIDAARGLWARVF--APAAAAQAAAPMPVMVYYH 111


>06_03_1282 -
          28946363-28946533,28947234-28947272,28947399-28947566,
          28947605-28947697,28948135-28948215,28948409-28948499,
          28948657-28948728,28948803-28948903,28949283-28949381,
          28949631-28949954
          Length = 412

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 5  IVVLCALV-AVSKAGLLAAPVHYSPAEAVSSQSIVRHDQPQ 44
          IV+L A V AV     L  P HY+P   VSS S      P+
Sbjct: 15 IVILIAFVCAVGIGAYLYTPQHYTPCYLVSSNSCSSRPPPE 55


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.126    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,278,683
Number of Sequences: 37544
Number of extensions: 167288
Number of successful extensions: 302
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 2
length of query: 248
length of database: 14,793,348
effective HSP length: 80
effective length of query: 168
effective length of database: 11,789,828
effective search space: 1980691104
effective search space used: 1980691104
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)