GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000265-TA|BGIBMGA000265-PA|IPR000618|Insect cuticle
protein
         (248 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    32   0.006

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 31.9 bits (69), Expect = 0.006
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 154 AKIVAHQAEEIAYPKYEYNYSVADGHSGDNKSQQEVRDGD---VVKGSYSFHEADGSIRT 210
           A I + Q E      Y  N+  ++G S     Q +  D +   V +GS S+   DG   +
Sbjct: 27  AVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPDGQQVS 86

Query: 211 VEYTADDHSGFNAVVHNTAPTAAPTHIKALPALQY 245
           + Y AD+ +GF  V  +  PTA P   +   AL++
Sbjct: 87  ITYVADE-NGFQ-VQGSHIPTAPPIPPEIQRALEW 119


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.126    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,654
Number of Sequences: 429
Number of extensions: 1501
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 1
length of query: 248
length of database: 140,377
effective HSP length: 56
effective length of query: 192
effective length of database: 116,353
effective search space: 22339776
effective search space used: 22339776
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)