Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000264-TA|BGIBMGA000264-PA|IPR000618|Insect cuticle
protein
         (370 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        26   0.50 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    25   0.66 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    25   0.66 
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.66 
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   2.7  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 78  RQYAPIQYAPLHPGLQNFLPNQHIALTGTNAQTNVEWNGNDGSRKINNSPET-NINKQHL 136
           R YAP +Y PL  G+ +   N     T T+  T +  +   G     N P T NI     
Sbjct: 288 RSYAPERYPPLAQGVNDDAFNSVATPTPTSVMTELYPSPVPGHSTSPNLPLTHNIAHNPY 347

Query: 137 EPKNLHATANNVQFEKHEN 155
              +++ ++N +     +N
Sbjct: 348 PSHSIYPSSNLMPLNNIQN 366


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 55  YKFTAIHADPAVRPIAETTQGHHRQYAPIQYAPLHP 90
           Y+F  I++  +V P   T QGH          P+HP
Sbjct: 344 YRFRMINSFASVCPAQLTIQGHDLTLIATDGEPVHP 379


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 55  YKFTAIHADPAVRPIAETTQGHHRQYAPIQYAPLHP 90
           Y+F  I++  +V P   T QGH          P+HP
Sbjct: 344 YRFRMINSFASVCPAQLTIQGHDLTLIATDGEPVHP 379


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)

Query: 308 QQEVRDGDVVKGSYSF--HEADGSIRTVEYTAD 338
           ++   DG +V G Y    H+ DGS+R V YTAD
Sbjct: 208 EERTSDGFIV-GEYGVVSHD-DGSLRGVRYTAD 238


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 314 GDVVKGSYSFHEADGSIRTVEYTADDHNGFNAVVHNTAPTAAPTHIKA 361
           GD+ KG+++  EA   I     T     G+NA     AP AA   ++A
Sbjct: 76  GDIEKGNFAEVEALKEINPNLKTIISIGGWNAGNAILAPIAASPELRA 123


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.126    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,308
Number of Sequences: 317
Number of extensions: 3131
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 370
length of database: 114,650
effective HSP length: 58
effective length of query: 312
effective length of database: 96,264
effective search space: 30034368
effective search space used: 30034368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)