Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000264-TA|BGIBMGA000264-PA|IPR000618|Insect cuticle
protein
         (370 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130469-1|AAI30470.1|  434|Homo sapiens hereditary sensory neur...    33   1.6  
BC130467-1|AAI30468.1|  434|Homo sapiens hereditary sensory neur...    33   1.6  
AF457207-1|AAL91370.1|  419|Homo sapiens pygopus 1 protein.            31   6.5  
EF011620-1|ABK41110.1|  358|Homo sapiens CDW10/WDR53 protein.          31   8.6  
BC054030-1|AAH54030.1|  358|Homo sapiens WD repeat domain 53 pro...    31   8.6  

>BC130469-1|AAI30470.1|  434|Homo sapiens hereditary sensory
           neuropathy, type II protein.
          Length = 434

 Score = 33.1 bits (72), Expect = 1.6
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 124 NNSPETNINKQHLEPKN--LHATANNVQFEKHENFVPGHNVEVLQSVDSN-PVHNTVYRS 180
           N     ++N++ L P++  LH     V  EKH    P   V V++ +  N P+ +  Y S
Sbjct: 291 NRQVAVDLNQEELPPQSVGLHGYLQPVTEEKHNYHAPELTVSVVEPIGQNWPIGSPEYSS 350

Query: 181 SSDDIEKS 188
            S  I  S
Sbjct: 351 DSSQITSS 358


>BC130467-1|AAI30468.1|  434|Homo sapiens hereditary sensory
           neuropathy, type II protein.
          Length = 434

 Score = 33.1 bits (72), Expect = 1.6
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 124 NNSPETNINKQHLEPKN--LHATANNVQFEKHENFVPGHNVEVLQSVDSN-PVHNTVYRS 180
           N     ++N++ L P++  LH     V  EKH    P   V V++ +  N P+ +  Y S
Sbjct: 291 NRQVAVDLNQEELPPQSVGLHGYLQPVTEEKHNYHAPELTVSVVEPIGQNWPIGSPEYSS 350

Query: 181 SSDDIEKS 188
            S  I  S
Sbjct: 351 DSSQITSS 358


>AF457207-1|AAL91370.1|  419|Homo sapiens pygopus 1 protein.
          Length = 419

 Score = 31.1 bits (67), Expect = 6.5
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 62  ADPAVRPIAETTQGHHRQYAPIQYAPLHPGLQNFLPNQHIALTGTNAQTNVEWNGNDGSR 121
           + P   P +   Q H     P+      P   NF P+ + +    +    +  N N  ++
Sbjct: 115 SSPYCGPYSLRNQPHPFPQNPLGMGFNRPHAFNFGPHDNSSFGNPSYNNALSQNVNMPNQ 174

Query: 122 KINNSPETNINKQHLEPKNLHATANNVQFEKHENFVPGHNVEVLQSVDSN 171
               +P  N ++  + P+N    +N    +   NFVPG+N      ++SN
Sbjct: 175 HFRQNPAENFSQ--IPPQNASQVSNP---DLASNFVPGNNSNFTSPLESN 219


>EF011620-1|ABK41110.1|  358|Homo sapiens CDW10/WDR53 protein.
          Length = 358

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 95  FLPNQHIALTGTNAQTNVEWNGNDGSRKINNSPETNINKQHLEPKNLHAT-------ANN 147
           FLP  ++ LTG N      W+ N    K   SP    +++  +PK    T       A+ 
Sbjct: 249 FLPESYLLLTGGNDGKITLWDANSEVEKKQKSPTKRTHRK--KPKRGTCTKQGGNTNASV 306

Query: 148 VQFEKHENFVPGHNVE 163
              E+H N +P  N+E
Sbjct: 307 TDEEEHGNILPKLNIE 322


>BC054030-1|AAH54030.1|  358|Homo sapiens WD repeat domain 53
           protein.
          Length = 358

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 95  FLPNQHIALTGTNAQTNVEWNGNDGSRKINNSPETNINKQHLEPKNLHAT-------ANN 147
           FLP  ++ LTG N      W+ N    K   SP    +++  +PK    T       A+ 
Sbjct: 249 FLPESYLLLTGGNDGKITLWDANSEVEKKQKSPTKRTHRK--KPKRGTCTKQGGNTNASV 306

Query: 148 VQFEKHENFVPGHNVE 163
              E+H N +P  N+E
Sbjct: 307 TDEEEHGNILPKLNIE 322


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.312    0.126    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,013,295
Number of Sequences: 224733
Number of extensions: 1752299
Number of successful extensions: 2740
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2740
Number of HSP's gapped (non-prelim): 5
length of query: 370
length of database: 73,234,838
effective HSP length: 91
effective length of query: 279
effective length of database: 52,784,135
effective search space: 14726773665
effective search space used: 14726773665
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 66 (30.7 bits)