GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000264-TA|BGIBMGA000264-PA|IPR000618|Insect cuticle
protein
         (370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0613 + 24392238-24393550,24394585-24394687,24395153-24395257     32   0.85 
07_03_1469 - 26742772-26743848                                         31   2.0  
06_03_1282 - 28946363-28946533,28947234-28947272,28947399-289475...    30   3.4  

>02_04_0613 + 24392238-24393550,24394585-24394687,24395153-24395257
          Length = 506

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 46  FTREDVPISYKFTAIHADPAVRPIAETTQGHHRQYAP-IQYAPLHPGLQNFLPNQHIALT 104
           FT+  V + YK  A+ ADPA   ++     H   Y P  Q  P     +N+L  Q    T
Sbjct: 10  FTQLLVLVLYKIAAVGADPANAELSTKITQHSPLYNPQPQDFPNEELYRNYLVIQRFKKT 69

Query: 105 GTNAQTNV--EWNGND 118
            T+   N+   W G+D
Sbjct: 70  ITSDPKNITATWTGHD 85


>07_03_1469 - 26742772-26743848
          Length = 358

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 317 VKGSYSFHEADGSIRTVEYTADDHNGFNAVVHNTAPTAAPTHIKALPALQYYH 369
           V+   S   A G++R+ ++T D   G  A V   AP AA      +P + YYH
Sbjct: 61  VRADPSPDAATGAVRSFDFTIDAARGLWARVF--APAAAAQAAAPMPVMVYYH 111


>06_03_1282 -
           28946363-28946533,28947234-28947272,28947399-28947566,
           28947605-28947697,28948135-28948215,28948409-28948499,
           28948657-28948728,28948803-28948903,28949283-28949381,
           28949631-28949954
          Length = 412

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 194 IVVLCAFV-AVSQAGLLAAPVHYSPAEAVSSQS 225
           IV+L AFV AV     L  P HY+P   VSS S
Sbjct: 15  IVILIAFVCAVGIGAYLYTPQHYTPCYLVSSNS 47


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.126    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,476,298
Number of Sequences: 37544
Number of extensions: 372231
Number of successful extensions: 701
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 3
length of query: 370
length of database: 14,793,348
effective HSP length: 83
effective length of query: 287
effective length of database: 11,677,196
effective search space: 3351355252
effective search space used: 3351355252
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)