GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000264-TA|BGIBMGA000264-PA|IPR000618|Insect cuticle
protein
         (370 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61210.1 68418.m07678 SNAP25 homologous protein SNAP33 (SNAP3...    32   0.71 
At4g25900.1 68417.m03724 aldose 1-epimerase family protein simil...    30   2.2  
At4g02810.1 68417.m00381 expressed protein                             29   3.8  
At3g05937.1 68416.m00674 expressed protein no suitable start cod...    29   5.0  
At1g15780.1 68414.m01893 expressed protein                             29   5.0  
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa...    28   8.7  
At3g06120.1 68416.m00703 basic helix-loop-helix (bHLH) family pr...    28   8.7  
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    28   8.7  
At1g13030.1 68414.m01511 sphere organelles protein-related conta...    28   8.7  

>At5g61210.1 68418.m07678 SNAP25 homologous protein SNAP33 (SNAP33)
           (SNAP33B) / synaptosomal-associated protein SNAP25-like
           1 / snap25a identical to SNAP25 homologous protein
           SNAP33 (AtSNAP33) (Synaptosomal-associated protein
           SNAP25-like 1) (SNAP-25 like protein 1) (Snap25a)
           (Swiss-Prot:Q9S7P9) [Arabidopsis thaliana]
          Length = 300

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 18/73 (24%), Positives = 30/73 (41%)

Query: 290 KYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSIRTVEYTADDHNGFNAVVHN 349
           KY+Y  +  D    +N+S QE+    V K   +     G ++  E    D      ++H+
Sbjct: 80  KYQYKNNFRDSGGIENQSVQELEGYAVYKAEETTKSVQGCLKVAEDIRSDATRTLVMLHD 139

Query: 350 TAPTAAPTHIKAL 362
                  TH KA+
Sbjct: 140 QGEQITRTHHKAV 152


>At4g25900.1 68417.m03724 aldose 1-epimerase family protein similar
           to apospory-associated protein C; APOC [Chlamydomonas
           reinhardtii] GI:6970044 Pfam profile PF01263: Aldose
           1-epimerase
          Length = 318

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 277 VLAHREDQEIAYPKYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSF 323
           V +  ED +I   K+EY   VA GH GD      V++ D    +++F
Sbjct: 137 VRSSNEDLKIWPHKFEYRLRVALGHDGDLTLTSRVKNTDTKPFNFTF 183


>At4g02810.1 68417.m00381 expressed protein 
          Length = 271

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 111 NVEWNGNDGSRKINNSPETNINKQHLEPKNL 141
           N  + G  G++K++N P+   N+   EPK +
Sbjct: 229 NENFEGKSGNKKVSNRPKRRCNENGCEPKTM 259


>At3g05937.1 68416.m00674 expressed protein no suitable start codon
           was identified.
          Length = 205

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 76  HHRQYAPIQYAPLHPGLQNFLPNQHIALTGTNAQTNVEWNGN 117
           HHR   P+Q   +HP   N L +Q +     N+ +N  W  N
Sbjct: 74  HHRN--PVQEISIHPFEHNSLLSQFLIPRSRNSSSNGVWQSN 113


>At1g15780.1 68414.m01893 expressed protein
          Length = 1335

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 26/148 (17%), Positives = 60/148 (40%), Gaps = 9/148 (6%)

Query: 34  QESSKQAISSQSFTREDVPISYKFTAIHADPAVRPIAETTQGHHRQYAPIQYAPLHPGLQ 93
           Q+  +Q +  Q+F   +VP        H     + + +  Q H  Q   +  +   P   
Sbjct: 229 QQQLQQQLLKQNFQSGNVPNPNSLLPSHIQQQQQNVLQPNQLHSSQQPGVPTSATQPSTV 288

Query: 94  NFLPNQHIALTGTNAQTNVEWNGNDGSRKINNSPETNINKQHLEPKNLHATANNVQFEKH 153
           N  P Q +    TN Q++ + +    ++ +    ++++ +QH  P++  A+       + 
Sbjct: 289 NSAPLQGL---HTNQQSSPQLSSQQTTQSMLRQHQSSMLRQH--PQSQQASG----IHQQ 339

Query: 154 ENFVPGHNVEVLQSVDSNPVHNTVYRSS 181
           ++ +P  ++  LQ   +  +      SS
Sbjct: 340 QSSLPQQSISPLQQQPTQLMRQQAANSS 367


>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 496

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 9/139 (6%)

Query: 64  PAVRPIAETTQGHHRQYAPIQYAPLHPGLQNFLPNQHIALTGTNAQTNVEWNGNDGSRKI 123
           P V P+A       R+ AP    P +PG +     + +  + T A      +      ++
Sbjct: 363 PEVSPVASPAPHRSRKRAPSAPPPCNPGNRVHFKEKRVQFSSTPAPAP---SAGAPHHQL 419

Query: 124 NNSPETNINKQHLEPKNLHATANNVQFEKHENFVPGHNVEVLQSVDSNPVHNTVYRSSSD 183
           ++    +  K H+ P  + A   +V F  H    P   +   +   +N V +   +SSS 
Sbjct: 420 HSPAPISAAKSHIVP--ISAPLPHVVF-AHAAQPP---ITEPREPHANEVAHPQPQSSSS 473

Query: 184 DIEKSPKLNKIVVLCAFVA 202
            IE  P +  IV+L   VA
Sbjct: 474 AIEVLPAMPWIVLLMLIVA 492


>At3g06120.1 68416.m00703 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 202

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/65 (24%), Positives = 29/65 (44%)

Query: 121 RKINNSPETNINKQHLEPKNLHATANNVQFEKHENFVPGHNVEVLQSVDSNPVHNTVYRS 180
           RK  N P    + Q +EP +L A    V F + EN +     + + +  ++P  N   + 
Sbjct: 62  RKTLNRPSFPYDHQTIEPSSLGAATTRVPFSRIENVMTTSTFKEVGACCNSPHANVEAKI 121

Query: 181 SSDDI 185
           S  ++
Sbjct: 122 SGSNV 126


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 287 AYPKYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSIRT----VEYTADDHNG 342
           A PK  YN   AD  +      +E  DGD    S    E D ++ +     + T DD +G
Sbjct: 407 AVPKNIYN-GAADATTASADGDKEGSDGDSENSSVDLEEVDEAVESHPPPGDDTDDDEDG 465

Query: 343 FNAVVHNTA 351
            N +  + A
Sbjct: 466 SNKLTESDA 474


>At1g13030.1 68414.m01511 sphere organelles protein-related contains
           weak similarity to Swiss-Prot:Q09003 sphere organelles
           protein SPH-1 (Sphere protein 1) [Xenopus laevis]
          Length = 608

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 71  ETTQGHHRQYAPIQYAPLHPGLQNFLPNQHIALTGTNAQTNVEWNGNDGSRKIN--NSPE 128
           E + G   +  P++  P H   +        +L       NV WNGN   +K     + +
Sbjct: 319 EVSDGFGDEVVPVEVRPGHIRFKPLAGTDEASLDSEPLVENVLWNGNMTKKKGQKWGTEK 378

Query: 129 TNINKQHLEPKNLHATANNVQFEKHEN 155
           +  +K++ +  N  AT    + E   N
Sbjct: 379 SGFSKRYAQDFNEDATTQPAEAETLAN 405


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.126    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,615,956
Number of Sequences: 28952
Number of extensions: 300914
Number of successful extensions: 578
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 9
length of query: 370
length of database: 12,070,560
effective HSP length: 82
effective length of query: 288
effective length of database: 9,696,496
effective search space: 2792590848
effective search space used: 2792590848
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)