Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000263-TA|BGIBMGA000263-PA|IPR000618|Insect cuticle
protein
         (224 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   1.7  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   3.9  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 161 KSQHESRDGDAVHGEYTLLEADGS 184
           K+  +S  GD++HG Y++LE  G+
Sbjct: 395 KAIRDSMVGDSIHGLYSILETSGA 418


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 136 HHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGD----AVHG-EYTLLEADGSVRKVEY 190
           HH  +Y H  +D  +   D HS D+ S   S          HG  +  +E  GS  K E 
Sbjct: 17  HHTHDYDHHNHD--HHGHDHHSHDSSSNSSSEAARLQFIQEHGHSHDAMETPGSYLKREL 74

Query: 191 TADDHHGFN 199
              +H  F+
Sbjct: 75  PQFNHRDFS 83


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.130    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,272
Number of Sequences: 5004
Number of extensions: 20694
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 2
length of query: 224
length of database: 2,362,478
effective HSP length: 70
effective length of query: 154
effective length of database: 2,012,198
effective search space: 309878492
effective search space used: 309878492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)