GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000263-TA|BGIBMGA000263-PA|IPR000618|Insect cuticle
protein
         (224 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0213 + 6480521-6480644,6482347-6482499,6482582-6482980,648...    28   7.1  
08_02_0602 + 19183549-19184919                                         27   9.3  

>03_02_0213 +
           6480521-6480644,6482347-6482499,6482582-6482980,
           6483158-6483234,6483990-6485312
          Length = 691

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 147 DFAYSVADGHSGDNKSQHESRDGDAVHGEYTLLEADGSVRK--VEYTADDHHGF-NAV 201
           ++A S  DG  G  KSQ + RD D   GE    +   + +K  V ++ + H  F NAV
Sbjct: 162 EYASSANDGAEGSWKSQKKKRDKDDDDGELESGDPSSTSKKPRVVWSVELHQQFVNAV 219


>08_02_0602 + 19183549-19184919
          Length = 456

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 118 AAPEARVIAPAHKVLVAGHHEEE---YAHPKYDFAYSVADGHSGDNKSQHESRDG 169
           A  +  V +    +L++  HE     YA+ + D A   ADGH   ++SQ E   G
Sbjct: 214 ACADLDVTSSNQPLLLSAEHEVVDALYANQEADAAILHADGHHNQDESQREHHHG 268


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.130    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,614,116
Number of Sequences: 37544
Number of extensions: 153057
Number of successful extensions: 301
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 2
length of query: 224
length of database: 14,793,348
effective HSP length: 79
effective length of query: 145
effective length of database: 11,827,372
effective search space: 1714968940
effective search space used: 1714968940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)